RNA id: AMCG00011074


Basic Information

Item Value
RNA id AMCG00011074
length 612
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00011074
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9344531 ~ 9391101 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGTGGAGTGGTCCAGTCAGGAGGTGCAGGTTACGGATGTGCACTGTTTCTATGGATTCCAGATTACCATGGAGAACATCCACTCCGAAATGAACAGCTTGCTCATGGAGACCTATATCAAGGACTCCAGTGAGAGaTGTTTAAATCCGCTCGCCCGGACTCTAAGCATCCTCAGCTTGCAGAGCCGCCGCTGGGTGCCCGTGCAGACCGCCTGGCAGAGGCCGCTTCTCTCGCAGGGCATCGCGCAGTGCCAGGCTGTGTGGAGCTCCGCGCTGCTGAAGGAGCTCAGGAGACGCACGTCGGTCTATCGCCGcacggagagacagagagggtgCCGGGTCAGCAGCACACGATCGCCATCACTGTATCTTGGCCAGGCCATGCTGCTGGTAACAGGATATTGGATCAAGTTCCAGCTGCGGTCCATAGATCTGGGGATTGGCTCTGCTGATAACTGCAAATCTCCCGAGCACGTGTGCAGCACCCTGGTCTCAGCAGTGCCATCTCTGATTTATGGAAGATTTAAGTTATCAGACAAGACCACAGCCAAGCGAGaAAGAGCAGAGCGCTGTGTGCCCAGGGGATCTCGAGAGGTTTCAGATCGGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0005737 cytoplasm cellular_component
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130080 lncRNA upstream 118353 9223185 ~ 9226178 (+) True G104079
TU130060 lncRNA upstream 185312 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA upstream 185346 9158321 ~ 9159185 (+) False G104062
TU130013 lncRNA upstream 373761 8967878 ~ 8970770 (+) True G104029
TU130035 lncRNA upstream 395708 8947773 ~ 8948823 (+) True G104042
TU130182 lncRNA downstream 83073 9474174 ~ 9475843 (+) True G104147
TU130186 lncRNA downstream 86466 9477567 ~ 9481674 (+) True G104150
TU130260 lncRNA downstream 302043 9693144 ~ 9746864 (+) True G104204
TU130278 lncRNA downstream 481552 9872653 ~ 9872890 (+) True G104221
TU130296 lncRNA downstream 878703 10269804 ~ 10271863 (+) False AMCG00011089
AMCG00011064 mRNA upstream 118 9326329 ~ 9344413 (+) True AMCG00011064
AMCG00011062 mRNA upstream 46880 9292633 ~ 9297651 (+) True AMCG00011062
AMCG00011055 mRNA upstream 189352 9141598 ~ 9155179 (+) True AMCG00011055
AMCG00011056 mRNA upstream 217946 9122397 ~ 9126585 (+) True AMCG00011056
AMCG00011053 mRNA upstream 384333 8954206 ~ 8960198 (+) True AMCG00011053
AMCG00011065 mRNA downstream 297 9391398 ~ 9409014 (+) True AMCG00011065
AMCG00011066 mRNA downstream 34081 9425182 ~ 9430080 (+) True AMCG00011066
AMCG00011067 mRNA downstream 44108 9435209 ~ 9439791 (+) True AMCG00011067
AMCG00011063 mRNA downstream 68233 9459334 ~ 9467512 (+) True AMCG00011063
AMCG00011076 mRNA downstream 141931 9533032 ~ 9549520 (+) True AMCG00011076
TU129898 other upstream 791926 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 2423600 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2701903 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4702173 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 5260945 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 139373 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 1427587 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2275097 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 2417745 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 2451028 11842129 ~ 11844089 (+) True G104435

Expression Profile