RNA id: AMCG00011077


Basic Information

Item Value
RNA id AMCG00011077
length 2420
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00011077
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9508584 ~ 9516296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagagagagagagagagagagagagagagagaataggagAACAAgagacctggagagagagaaacaacttACGGATACAGTAGAtcaacagagagacagaaagaggcAGGGGTTGGGGACAGCTTAGGGTTCAACATCTTTTGGGCAGTGAGCATTGGGGGCAATCCATGAGGATCTGAACACAGCAAACAGGAAGCCAGGGGTGgtttaacagaaaataagaaaaaaaacacaactgaggactttctgaaacaaagagacggagacagagagagggacagagacagagagagggggacagagacagagagagggggacagagacagaggggggcAACAGAAACACTGCCACTGACTGAGCTAAGGACAAAAAGAATCAGAGGGCGCGCACCCccggagacagagagagagagacagcgagagagaaGGTCGGCCTTGACAGGGTCCCCTGTTTCGGGGGGTGGGCTTGGGCTGCAGTGGAGAGGAGCCCTATCCCGCCTGAACCCAGCCACACACTACCAGAAGAGCCCCGGGGACAAGCAGTGTGAGCGTccgtcagtctgtctgtcactcTGTCAACGTGGGACAGAGGCGGCTCGGCCATGAAGAGACCCCACGAATACAGCTCCCCGGAGACCGACCCCGATGAGCTGATTGACGTTGGACAGGAGGACAGCTACTGCCCAGTGACGGGTTCCATGTCCCCTGGCAGCACCTCACAGATATTAGCACGCAAGAAACGCAGGGGGATTATCGAGAAGAGACGGAGAGACCGCATCAACCACAGCCTGTCCGAGCTGCGTCGCCTTGTCCCCAGTGCCTTCGAGAAGCAGGGCTCCTCCAAGCTGGAGAAGGCCGAGATCCTGCAGATGACGGTGGATCACCTGAAACTGCTGCATGCCATGGGGGGGAAAGGCTACTTTGATGCCCGGGCCCTGGCAGTGGACTACAGGACACTGGGTTTCCGGGAGTGTGTGGGCGAGGTGGTACGGTACCTGAGCTCCCTGGAGGGACTGGAGACCCCGGACCCCATTGGGGCCCGCCTCGTGTCCCACCTCAGCCACTGTGCCAGTGAGCTCGATCCCCTCCTGCAGAGTCCCGCCGCCCTGCCCTTCCCCCCCTGGCCCTGGGCCTTCCCCCagctctccccctcctcctcttcgtcctcctcctcctcctcctcctcctccttccccaggGCAGTGTGTGATGTCCGTCTCCCCCGCAGAGACATTCCACCCCCCAACAGCACCCTGCTGGCCGCCTACCACTCCCCTGCCCTCCGTTCCGCTCCTATCGGTTGCCTGCCCACCAGTCAACTGGCAGCCCCCCTGTCCTCGCCCCCTCTGCGCAGAATCCCCTCCCTGCCATCCCCGGTGGGGCACAGACTGTCCCAGCCATCTTCGGACACCCAcacctcctcccctctcctggctccTGCTCCCTGTGGCCCTCAGATGTCCTTCAGACCCTTCACCCACTTTGTGCCACCAGCCCCTGGCACCCAGCGTGGGGGCGCAGGCAATGCAGGCAAAGCCGCCCGCTCCTGGGGCACTGAGATCGGAGCCTTCTGAGCCAGGAACTCAACAGCTGGCACCGGGATTCCCACCCAGCAAAGACACCCCTCTTTCAGACAACAGCACACAGCCAACATCACAGGGAACGGACGTCAAATGCAAACCTTTTTGATTTCCCCACCCCAGACAGTGAGCTTCGAGAAGTCAAGAGTCGGCTGGCAGTCGGGCTGGAGAAGGGGGTCGGGGTTCCGGGTGGAAGTATTCAGAGGGCAGCGGACTACAGCAGGGGCACGATTGATTCACTACGAATCTGGGCGACTTGACAAACATCACCAGGCACCAGCAAAGGAACGGCAGAGATATCCATCAAGACACAAATTAGATCAGGTTGCTTCCTggaatgagagaaaaaaaatctaattaaagagAACAGAAACCGAACTGAACAAGAAGAGTTTCTGCTTTGACAGATGAGCTGAGAGAAGCACTATATGGACCTACCCAGATGAACATTGCGTGGGCTCTCCGTGTCCTTTTACAGCCACAGAGCACTCTCTCGAATGCAACATGACAGAGACTCAGCCCATGACCCAGGCTGGCAAAGTGGCAGAGCTCAGTGTCCCAGTTGTGTAGCTGTTTGATTTTCTATGATTCTCTCTTTGCCATTTTGTGTGagtgttgatttttatttacttcttttgttatcattataattattatttttaaacatctgaCACTGTCTGATGtccatttttatattgttcagTCCCCCAGGAGGACGAGGTGAGGGGTTGCAGAAGATtgttcatacaaaatatatgattttaaaaacagctaTCCATTCtcattgttgtattattattttttggagaGTGAAAGATAGAGATGAGAGTGTG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 95662 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 243097 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 543005 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 543303 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 658623 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1207294 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1429705 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1899894 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1904453 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 1994927 11511223 ~ 11593619 (-) True G104341
AMCG00011078 mRNA downstream 9501 9489542 ~ 9499083 (-) True AMCG00011078
AMCG00011071 mRNA downstream 19937 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011072 mRNA downstream 35509 9468676 ~ 9473075 (-) True AMCG00011072
AMCG00011070 mRNA downstream 48289 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011069 mRNA downstream 64250 9438987 ~ 9444334 (-) True AMCG00011069
AMCG00011084 mRNA upstream 85081 9601377 ~ 9619279 (-) True AMCG00011084
AMCG00011086 mRNA upstream 226052 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011083 mRNA upstream 228952 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011085 mRNA upstream 236400 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011092 mRNA upstream 943266 10459562 ~ 10479148 (-) True AMCG00011092
TU130111 other downstream 272391 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 644918 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 644918 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1489062 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3760020 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 85588 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 224837 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2479117 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2551169 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2809801 12326097 ~ 12328282 (-) True G104629

Expression Profile