RNA id: AMCG00011078


Basic Information

Item Value
RNA id AMCG00011078
length 2305
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00011078
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9489542 ~ 9499083 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaatctctgCAGCACATCTGCATACAGTATATGTTTGCAGTGTCACGGGCAAAGTGCAGTTAGCTAAAAGCCCGGGAGGATCTGCTCTGATATAAACAGAGAGGTGATCTTGGGTGTGCAACATTGGGGAATCTCAGCACTGTGAGGAGGATCTCCCTTGATAAGTTGTGCTGTCTTTGAGAAATGAGAGggtctctgctgctgctgtgtctgGCTGGGCTGTGGGGCAGCTCCAGCACCACAGACTGTGTGAGACACCTGAGTGCGAACACTGACTTCCCAGGAGATGATGTCTTGCATATTTTAACGCCGGATGTTGATTACTGCCAGCTGGCCTGCACTCAGCATCCCACCTGCCTGTTCTTCTCATTTCACACCTCAGAGTCTACTATAGATAAAAGGCAATTCTACTGTTTCCTGAAGTCCACAAGCTCTGGCAAGCCCAGCGTTGAGAAGGAGTTGCAGGGAGTGATATCAGGCTACACACTGAAGGACTGTGGGGATGACCCTACAGACACCCCAGAGGACTGCCAGAAAGCCTGCACGAGAGACCTGGACTGCCAGTTTTTCAACTATCACACAGACACCTTCATAGCACCTGCTGATCGTCAAAAGTGTTATTTGAAGCACATCAAGAGCCTCCCCAGCCCTCCAACTATCAAGTCCACTAACAGCGTGATTTCGGGGTTTTCCCAGCGCCCCTGCCTCACTCAGAGCACTGGGACAGAGTGTCAGTCCAAGATCCTGCAAAACACTGAAATCCCGGGGATGGACTTCATGGAGCTGCCCGCTCCCTCTCCGGAGTACTGCCAGCTGCTGTGCACGACTCACCCTCACTGCACCTTCTTCTCCTTCACCAACGAGAAATACGCCACGCCCAATAAGAGgctAGTCTGCTTCCTTAAAAATGGAGACACGCGACCAATCACAGCCAAATCAGAATATTGTTACCTGAAGAAGGTGATTTCGGTCCCTTTGCCACCCAAGATCCTATCTCTGCAGGGGACTGTGTCTGGGTTTCAGATAAGAGGCTGCCAGGAGACTGTGCCAGAAGTGACCGAGTGTGGGAAAGCAAAGGCAGGCCTTCAGCGCATTCTGGGTGGTGAGAATGCCAAGCTGCAGCAATGGCCCTGGCAAGTGTCCTTGCACCTCTCCTCTCACTTGTGCGGCGGCTCCATCTCGGACGCACTTTCTGAATACTACAGAGTGGACAAGATCATTCAGCATCCAGGGTATGATGAAGACACTTTCAAAAATGACATCGCCTTGCTGAAACTGAACAAACCCATCAAGTACTCAGaTATACAACAGCCCATTTGCCTGCCAGATGTGCAGCAAGTAGAGATGTTCTGGGAAAAGTCGTGTTGGATTACAGGCTGGGGATACCTAACCTCAGTGGGGCGTCTGCCAAATACCCTTCAGCAAGCAGCGGTCCCTCTGATTAAACATGAGGCCTGCAGCTCCTTGTACACTTCCAAACCTGTCTTCAACACCATGTTCTGTGCAGGATATTCTACAGGGGGAACTGACACTTGTAAGGGTGACAGTGGGGGCCCTCTAGTGTGCCAGGCTGGGGACACGTGGTACCTGATGGGCATCACCAGCTGGGGGGATGGCTGTGGGGAACCAGGGAAGCCAGGGGTGTACACCCGTGTTGAGAGCTACAGGGATTGGATCACAACCACCATCAGTAAGAATTTGTCAGTCAAGTAACACTGGACTTATTTACAGCTTTTGACTCTCACTAAAGGACAGTAGTACAGGAGAAGATGTAAACCGGCCAACCAGAACACTTCAGAAAGGtcacaaagaagaaaaagctaATCCAGTTCCTGTGCTCTTCTTCCCCGAGTTATTCACAGACCTTTACCTTACAGTTGTTCACCTGTTCCAGCAGGGAAAACCCTGTTCCTACTATCACGGACaaactttattgaaatacatgatatcaatgttaaaaacaaagaggtCCCCATGGATGTGTAagcaaattattgttttatttaatacaacatAACAGGGGTTACAGTGTGAAAGAACAGTGATTGATGACCTTCTGTAAAACAATACCTgtgaaattaaattcattacTGCAGTAAGGTTTGTGTGCAACTGTCCATATCTCTCAATCCTACATCATTGGAAAgctgtgtaaataaaaatgtgaagttacaacaatgataatattatgaataatacaaatggaCAGTTCTAATTAGAACATTAAACCTCTCTTGGAGATATGAACAATATTCCACTTCTAAGGCCAGTACAATatgaaatatgctttttaaaataaaa

Function

GO: NA

KEGG:

id description
K01323 F11; coagulation factor XI

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 76620 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 224055 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 523963 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 524261 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 639581 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1224507 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1446918 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1917107 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1921666 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 2012140 11511223 ~ 11593619 (-) True G104341
AMCG00011071 mRNA downstream 895 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011072 mRNA downstream 16467 9468676 ~ 9473075 (-) True AMCG00011072
AMCG00011070 mRNA downstream 29247 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011069 mRNA downstream 45208 9438987 ~ 9444334 (-) True AMCG00011069
AMCG00011068 mRNA downstream 54945 9430586 ~ 9434597 (-) True AMCG00011068
AMCG00011077 mRNA upstream 9501 9508584 ~ 9516296 (-) True AMCG00011077
AMCG00011084 mRNA upstream 102294 9601377 ~ 9619279 (-) True AMCG00011084
AMCG00011086 mRNA upstream 243265 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011083 mRNA upstream 246165 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011085 mRNA upstream 253613 9752696 ~ 9753490 (-) True AMCG00011085
TU130111 other downstream 253349 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 625876 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 625876 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1470020 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3740978 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 102801 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 242050 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2496330 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2568382 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2827014 12326097 ~ 12328282 (-) True G104629

Expression Profile