RNA id: AMCG00011084


Basic Information

Item Value
RNA id AMCG00011084
length 3186
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00011084
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9601377 ~ 9619279 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGGTTACCATGTAAGCCGGAGTCTGTCTCAGCACTCGTCCTCGGGGCCATGCCACTGTATCCCTGAGGACTGCAACCTGCCGCGTGACTACATGCCACACACAGGACTCTCACAGGACGCCCGTGCCTCCTTCGAACATTACCAGGGACTCAACGACCATCCTTCCTATTACCCCCCAGGGGGCCCGCCTGAGCCATTACCCCAGTCCAGTGGGGGCAGGGGTGGGGACGGTGGTGGAGGCGGGGGCACTTTCCCTCGCTCGCACCCCAGCCAGACTTACGACTCGTGCGAAGAATGCCTggcctcttcctcctctgctcAGCatccccacccctcctcctccaagATGCACCGACTTCCCCCTAATCTGCTGGACCAGTTTGAGAAACAGCTGCCTTTCCAACCAGATGGCTTCCACACCCTGCAGTACCAGCGGGCAGCCAGCGGGGAGCAGCGCAGTGAGAGCCCCAGCCGCATTCGCCACCTGGTTCACTCGGTGCAACGGCTCTTTGCCAAGTCCCACTCCCTGGAAGCGCCCTCCAAGCGGGAGTTCAACGGCACACGCTCAGAGTACCGGGGTGGGGCAACACGAGGCGCAAGCGAGGATGGGAACTACCACCACTACCCGCCCCCCCAACACCACGTCTCCCGGCAGCAGCGCCGCAGCAAGAGCCGGGAGCGCAGCAAGAGTGGGGAGCCACGGCACCGCAGCAAGACAGCCGGCTGGTGGAGCTCCGACGACAACCTGGACAGTGACAGCAGCTTTCTGGTATCAGTGGGGGCAGCTGGCAGGGCAGGGGCACCTCCCAGCCAGGAGGTCCTTGATGGCGTGATCCAAGACCTGACGCTCAAGACCCTCAAAGCCAAGGGACCACCAGGAGAGTGCCTGGCCTGCACCAGCATGGCTCTAGCGGGGGAGTCAGGCCATTCCCTGAAGAGGAGCACCTGGTCCTCCATGACAGTAAGCCAAGCCAGGGAGGTATACCCCTCTAACCGGGCTGGCTACGACAAGGCCCTGGTGCCGCTGGAGCCAAGCAAGTCCAAGGACCGCAGCTATCAGTATCTACAGGTGCCCTCTGACGAATGGGCAGGGGGGTACCCGGCGGGCGGccaggagggtgggggggagatcCCATGCCGTCGGATGCGCAGCGGCAGCTACATCAAGGCTATGGGGGATGACGACAGCGGGGACTCGGATGCAAGTCCCAAGGCCTCCCCCAAAACAGCCATCATAGCCCAGAGAGAAGCTTTCCGACGGTCAATCAGCATGGACCAGCGATCCTCCAACGCCAAGTACTCCTGTAAACAGTGCACCGATTCGTACTCTAACAGCCGCACCGCACCCAAGGGGAGCTCCAGGTCTCGCAGCTACGCTCGCTCTCTGACCAGCTCACAGCTGGGCGAGACGCTGAACCGCCAGTTCGAGGCGGTGTGTGAGTCCGTGTTCGGGGAGGTCGAGTCTCAGGCCGTGGATGCACTGGACCTGCCCGGCTGCTTCCGTATGCGCAGCCACAGCTACATCCGCGCCATCCAGGCCGGTTGCTCGCAGGACGATGACTGCCTGTCTGTGTTCTCCCTGTCCGGTACACAGGGGGGCGGCAAACCTGGGGCCGTTTTCCAGTACAGGAAAGcaccccctcctcttcctccccgcATCTCCAAGCCCCTGATTTCGGTCACGGCCCAGAGCAGCACAGAGTCCACACAGGACGCCTACTACCAGAGCACCGGGCAGCCGGCCGCCGGACGTCCCAAACAGCACAGCAACTCCGCCGAGAGCCTCGAAGGTGGCGGCCGCTCGTCCCGAACTGGCCACTACCAGAGCGGGACAGGTTCCAACACGGGGCGCAGCAAGCAGCACAGCAACTCAGCAGAGAGTCTGGATGGCAGCAGGGGGGTCAGGGACATCTATTACCACGGAGGGCAGGGGACAGTCAGGGCCAAGCAACACAGCAATTCTGCAGACAGCCTGCTGGAAGGAGGCAGGAGCTCTCGGGACCGGGCTGGGGGCAGCCTAGGGAAGTCCGCCTCCCTCCCCCAGAACAGCATCTCCAGTGGCAGGGGGGGCCTCCCTGCGCAAGAGGAGCACAAGCAGGAAGTCCGAGGCCGGAAGTGGAGGCCATCCATCGCTGTACAGGTCGACAGCTCAGAGACCCTCTCAGACTCAGACACAGAGAGCAAGGCGCTGAAGGAAGTTCACTCTATCGGCGTCCAGGTGGAGGAGGATAAGAGGCGCGCCCGCTTCAAGCGCTCCAACAGCGTGACGGCGAGTGTGCAGGCCGATCTGGAGACCGAGGGCTTCCCGGCGCTGGGCATCTCCATGCAGGACAAGGGGCTGCAGTTCGGCTGCTCCTTCCAGCGGCACTCCTCTGAGCCAGAGTCGGCGGGCCAGTACAGCGAGTACCGCACAGTCCACACGCAGGGCCAGTGGGCCTACCGAGAGGACTATCACAGCGCCTACGACAGCGGGCCCAGCTCCATGAGCGCACCGGCCCCCGCGGCCGCTGAGCGCCTCTGGCAGTCTGAGGGCCCCCGCAGCCTCCCTGACTCGGGCCAAGCCTCGCCCTGCCTCCGCGACGGGGAGTTCTTCCTGCGGCTCCTGCAGACGGAGGTGGAGAGGATGGAGGGATGGTGCCAGACTatggagagggaggcagaggagAATGACCTGCCAGAGGAGActCTGGAGAAGATCCGGAGTGCGGTCGGGAGTGCTCAGCTGCTGATGTCTCAGAAGGTGCAGCAATTtttcagactgtgtcagcaaagTGTGGACCCCTCTGCGTACCCCCAGCCCAGTTCCCAGGACCTGGCTGGCTTCTGGGACCTGCTCCAGCTGGCAATGGAGGACGTTCGAGCCAAGTTCCAGGAGCTGCAGAGAATGAAGGATGCTGGCTGGAGACCAACGGACAAGAAGgaAGAGAAAAAGGCTCCTCCTCCGTTACCAAAGAAGCCTGTGGCAGGAGCTGGGGTTAGCGTGGGGGGGCTGGTGATCTCGAGGGGGGGGAAAGGTCTTCCAATGAGAGAGAAGTCGCTGGATCTGGGCGACCGGCAGCGGCAGGAAGTCCGGCGGAGGCTGCTGTCTGCCAAACGAGCCGCTTCTTTCCGGCAAAACTCAGCCACGGAGAGCGCTGAAAGCATTGAGATATACATCCCTGAGGCCCAGACCCGGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 188455 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 335890 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 635798 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 636096 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 751416 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1104311 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1326722 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1796911 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1801470 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 1891944 11511223 ~ 11593619 (-) True G104341
AMCG00011077 mRNA downstream 85081 9508584 ~ 9516296 (-) True AMCG00011077
AMCG00011078 mRNA downstream 102294 9489542 ~ 9499083 (-) True AMCG00011078
AMCG00011071 mRNA downstream 112730 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011072 mRNA downstream 128302 9468676 ~ 9473075 (-) True AMCG00011072
AMCG00011070 mRNA downstream 141082 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011086 mRNA upstream 123069 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011083 mRNA upstream 125969 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011085 mRNA upstream 133417 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011092 mRNA upstream 840283 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011103 mRNA upstream 1750421 11369700 ~ 11395747 (-) True AMCG00011103
TU130111 other downstream 365184 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 737711 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 737711 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1581855 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3852813 5704770 ~ 5748564 (-) True G103395
TU130270 other upstream 121854 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2376134 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2448186 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2706818 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 2816592 12435871 ~ 12457327 (-) True AMCG00011152

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028247 True 3846 mRNA 0.54 10 NC_007130.7 37458610 ~ 37492517 (+)