RNA id: TU130252


Basic Information

Item Value
RNA id TU130252
length 281
RNA type TUCP
GC content 0.58
exon number 3
gene id AMCG00011084
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9601377 ~ 9619279 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGATGGTGCCAGACTatggagagggaggcagaggagAATGACCTGCCAGAGGAGActCTGGAGAAGATCCGGAGTGCGGTCGGGAGTGCTCAGCTGCTGATGTCTCAGAAGGTGCAGCAATTtttcagactgtgtcagcaaagTGTGGACCCCTCTGCGTACCCCCAGCCCAGTTCCCAGGACCTGGCTGGCTTCTGGGACCTGCTCCAGCTGGCAATGGAGGACGTTCGAGCCAAGTTCCAGGAGCTGCAGAGAATGAAGGATGCTGGCTGGAGACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 188962 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 336397 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 636305 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 636603 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 751923 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1120849 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1343260 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1813449 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1818008 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 1908482 11511223 ~ 11593619 (-) True G104341
AMCG00011077 mRNA downstream 85588 9508584 ~ 9516296 (-) True AMCG00011077
AMCG00011078 mRNA downstream 102801 9489542 ~ 9499083 (-) True AMCG00011078
AMCG00011071 mRNA downstream 113237 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011072 mRNA downstream 128809 9468676 ~ 9473075 (-) True AMCG00011072
AMCG00011070 mRNA downstream 141589 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011086 mRNA upstream 139607 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011083 mRNA upstream 142507 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011085 mRNA upstream 149955 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011092 mRNA upstream 856821 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011103 mRNA upstream 1766959 11369700 ~ 11395747 (-) True AMCG00011103
TU130111 other downstream 365691 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 738218 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 738218 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1582362 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3853320 5704770 ~ 5748564 (-) True G103395
TU130270 other upstream 138392 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2392672 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2464724 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2723356 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 2833130 12435871 ~ 12457327 (-) True AMCG00011152

Expression Profile