RNA id: AMCG00011100


Basic Information

Item Value
RNA id AMCG00011100
length 2660
RNA type mRNA
GC content 0.60
exon number 38
gene id AMCG00011100
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11303064 ~ 11347011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCAGAATTGGCATTGATGAGGATCCATCTGAGCCGGGATTAATCAATTCTAATAGGTGGGAGCGGTGCTGCTGACAAACGGACCATGTGGATTGCCTGGTCTCCAGTAGTCCCAGTGGTGCTATGGCTGCTGAACACGATATCCCAGAGTGAGGCGGTCCTGCTGTCCTCCAGCACAGGTGTTCGTTGCCCGTTGTTGCAGGTAGAAGAATGGAAATTCCCACAGACGGCTGAGCTGCGACAGAACATCACAGGCTTCAATTTGGTGAGGAAGTTTGCTCTGCTAAAGACGCCAGAGGTTAAGAAGATCAGAAACCCGCGAGGACCCGTCATCCTCAGGCTGGGCAACGTCTCACTGAACAAACCCACTGAGCAGGTGTTCCCCCATGGCCTCCCACAGGAATTCACAGTGGTCCTCACCCTGCTTCTGAAGAAAAAGACTGTGAAAGAAAACGTCTACCTGCTCCACATCACTGACCAGCAAGGATACCCACAGTTCTCCCTGGACCTCAATGGGCTGGAGCGGACGCTGTCAGTGCGGGCGCGCAGCCagggtgaggaggaggagtcCGTGGGCTGCGTGTTCTCTGGGGAAGGCGTGACCTCGCTCTTTGACATGCGCTGGCACAAAGTGGCGCTGAGCATCGGGGCCATGGCCGCCTCCCTGCACGTCGACTGCAGCTCGATCGAGACCAAGTTCTTGGACGGACGGCGGGGGGTGGAGCCACAGGGACATACTTTCCTGGGCTTACGGGCCTCCGACGGCAAGGCAGTGGAGGTTGATATTCAGCAGGTGACCGTGTACTGTGACTCTAGCCTGGCCATTAAGGAGGCTTGCTGTGAGATCCCCGGCGCTAGGTGCCCCCCTGACACCTCTAAGAGCAGGCGTGCCGCGGAGACCGCATCCCCACGGTCCAACCTGGTGGAGGTGGCCCCACGGCCCGAAGGCAAGGTGTACACTCGCTGCTTCTGCCTGGAGGAGGGACCAGGGGACATGCAGggtcctccaggaccacaAGACTTAACAGACAAATGTGCCCCTTGTGTCCACACGGATCGGGAACAAAACGATGAGGTCGTGCCCTACAAAGTCAAGGCAGAGAAAGGAGACAGGGGGGTCCCAGGGCATCATGGCATGAAGGGAGAGAAGGGAGATCAGgGTGCAGACTGCATTGGTACTGGCTCCGGTTCCTCTGGCCCCTGTGCCGAGGGATCCAAAGGAGAAAAGGGAGCAAAGGGCGAATtgGGGCCAGCTGGGATTGGGTCAAGGGGGGAGAAGGGAGTTAAGGGCCGGCCTGGAGAGATCTGTGTTGTGGGTCCCAAAGGGCAGAAGGGCAGTCCGGGGGGCCCTCCTGGATCGAAGGGAGATAAGGGGGATTCTGGGATACCTGGTACAGACGGTCAGCCGGGAGATCCTGGACCCAGGGGATCAGGAGGTCCAAAGGGAGAGAAGGGGGACCCCTGTGAGGTGTGTCCGGTGCTGCCCGAGGGTGTGGAGAACATCGGACCAGCTGGCCTCCAGGGATTTAAAGGTGACAAGGGTGAGACTGGCTCAGGTGGGCTTAAAGGCGAAAAGGGCGATCCTTGTGAGGTGTGCCCGACACTTGGCCAACTGCCTGCCAACATAAAAACCATCGAGCGGCATACCGTGGCACTCAAGGGGCAGAAGGGAGAGGTCGGGGGAGGAGAAAAGGGAGAGCCGGGTGAGCCCGGAGGCACGGGTCTGGCAGGACTGAAAGGAGAAAAGGGCAACAGCGGCAGCAAAGGAGCTGACGGGAAAACAgGCAAGGCAGGTCTGCGGGGCCTACCTGGCCGGGATGGCAGTAAAGGAGATCGGGGCGAACCTGGGCAACCTGGATTAAGTGGGGATACAGGGATAAAAGGCGAGaagGGTGACGCCTGCGGACTGTGTCCCACACTGCCAGCTGAGGTCGGTGGCAGTCAGACCATCATCAAGCTGCCCGGTTTGCCTGGGGAGAGGGGCGACCCTGGACTCCCAGGGACAGGAGAGCCAGGGACACCGGGGGAGCAGGGGAACCAGGGGGACCCAGGAACAGCAGGGCCCGCGGGGATGCCAGGACTGGCAGGGGAGCCGGGAGGGAACGGCATACCAGGAACCAAGGGGGAGAAGGGAGATGCCTGTGAGATGTGTCCCTCAATCCCTGAGGGTCTAAAGGACATGGTGGGAATCCCAGGGGCAAAAGGTGAAAGAGGGGAGCCAGGAGTCCCAGGCATGGGCATCGCTGGGAAACACGGCAAGCCTGGCCTGCCTGGAGTACCGGGGCCACCTGGTCCCAAAGGTAGTCAGGGTAAAGAGGGACCAAGGGGGCCACCCGGGAAACCGGGACCCAAAGCTAAAGACGGAGCGACGGGATCGAAAGGAGCGAAAGGAGAGAAGGGCTCTGAGGGAGTGAAGGGGCCACCAGGACCCCAGGGCCCATTGGGCGTGGGAGCACCAGGGGCTGCGGGTAAGGATGGTATTCCTGGCCAACATGGGATTCCTGGGGAGGACGGGCACCCGggAACAAGTGGGCCCAAAGGGGACAAGGGAGATCCAGGGGAGTGTAACTGCCAGGCCCCTACCTTCACCAACTCCGGGAAGCCAGGCGCTCCTGGAACATTGGTCAATGGGAATATTTGGCATCCCGGACCTCAGGTC

Function

GO: NA

KEGG:

id description
K24339 COL16A; collagen type XVI alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130347 lncRNA upstream 579174 10723550 ~ 10723890 (+) True G104271
TU130328 lncRNA upstream 685868 10555729 ~ 10617196 (+) True G104255
TU130296 lncRNA upstream 1031201 10269804 ~ 10271863 (+) False AMCG00011089
TU130278 lncRNA upstream 1430174 9872653 ~ 9872890 (+) True G104221
TU130260 lncRNA upstream 1556200 9693144 ~ 9746864 (+) True G104204
TU130396 lncRNA downstream 25543 11372554 ~ 11377085 (+) True G104307
TU130401 lncRNA downstream 71655 11418666 ~ 11420066 (+) True G104310
TU130425 lncRNA downstream 185909 11532920 ~ 11593994 (+) True G104326
TU130484 lncRNA downstream 297006 11644017 ~ 11651021 (+) True AMCG00011110
TU130570 lncRNA downstream 497399 11844410 ~ 11844623 (+) True G104443
AMCG00011099 mRNA upstream 50216 11219888 ~ 11252848 (+) True AMCG00011099
AMCG00011098 mRNA upstream 131093 11136716 ~ 11171971 (+) True AMCG00011098
AMCG00011096 mRNA upstream 179011 11093835 ~ 11124053 (+) True AMCG00011096
AMCG00011097 mRNA upstream 209236 11039056 ~ 11093828 (+) True AMCG00011097
AMCG00011094 mRNA upstream 651637 10640780 ~ 10651427 (+) True AMCG00011094
AMCG00011101 mRNA downstream 4891 11351902 ~ 11369697 (+) True AMCG00011101
AMCG00011102 mRNA downstream 52838 11399849 ~ 11412952 (+) True AMCG00011102
AMCG00011106 mRNA downstream 125788 11472799 ~ 11490031 (+) True AMCG00011106
AMCG00011109 mRNA downstream 152554 11499565 ~ 11500270 (+) True AMCG00011109
AMCG00011107 mRNA downstream 180199 11527210 ~ 11530729 (+) True AMCG00011107
TU130349 other upstream 483641 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 1769650 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 2750459 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 4382133 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 4660436 6641983 ~ 6642628 (+) True G103542
TU130500 other downstream 319187 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 461835 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 495118 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 719483 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 1178349 12525360 ~ 12527031 (+) True G104694

Expression Profile