RNA id: AMCG00011101


Basic Information

Item Value
RNA id AMCG00011101
length 4832
RNA type mRNA
GC content 0.50
exon number 26
gene id AMCG00011101
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11351902 ~ 11369697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCACTGCCGCCGCTCGCAGACTCCGCTCTGAAGGTGAGGACCCAGGGACGACACGCGCGGAGTGTGCCGGATCTATGTGGCGACTGCTCCCAGGGGCTGCCGGGGGTTCCCGGGGTTACGGGGGTCAAGGGGGAGAAGGGGGAGCAGGGACAGCCTGGGACGGGAGTCGCGGACGACTGCCAGAATTGCTTCGAGAGGCTGCAGAAAGAGGAAGCTAGGGGGGACAACAGCAATACGGGTGGGCCCTGCCTGGCGGTGCCAGGGACACCCGGGATCCCCGGACTTcagggagagaagggagagcAGGGTCCCCCAGGTCAGAGAGGGTTTGCAGGTCCCCCAGGACCACTTGGTCCTCCAGGTTTCCCTGGTTCTCCAGGTCCCGCTGGATTACCGGGGCAGCAGGGGGAGCGAGGCCTGCCTGGATCTGATGGGGCCAAAGGAGAGCAGGGACCACCTGGGAACCCAGGGTACCCAGGATCGATGGGACCTCCTGGCCTACATGGTCTGAAGGGAGAGCGCGGGCAGCCAGGCACTGTGGGACAGAAAGGCGAATCGGGCCCACCAGGATCACCAGGGTACCAGGGGCAGCCAGGACCAGCGGGGCCCAAGGGTGACCATGGACCCTCCGGGAGCCCAGGCCTGAAGGGCGATCAGGGCCCCCCCGGCTTCCCTGGAAAGGCAGGCTCTCCCGGATCTCCTGGACCCTCAGGAGAGAAGGGCAGCGAAGGACAAAGGGGCCCCCAGGGACCTTCAGGCCCCCCCGGCCCAGCTGGTCCCCCCGGCATGCAAGGTCCTCCTGGGATTGAGGGCATGGACGGGAAGGACGGTAAACCAGGACCCAGAgGGGAGCCTGGTCCGATTGGTCCCGCTGGTCCACGAGGCATGCCAGGATTCAAGGGCAAAACAGGACACACTGGATTCCCAGGACAAAAAggcgaTGCTGGGCCTCAGGGACCACCTGGAGCTGCTGGGAGGCCTGGCGTTGAGGGTGACCACGGGAACCCTGGACCTCAAGGGCCAGCTGGACCACCTGGGCACTTAGGACCAGCTGGGCCAAtgggccctccaggaccagcaGGGTCCCCAGGACTGGGGATAAAGGGAGAGAAAGGCCAGAATGGAGAGAGGGGCCTCCCAGGAATGGGGGGACAGCCAGGTGCCCCTGGACACCCAGGACTGGCTGGAGAGCCCGGCAACGACGGCACACCAGGGAAAGATTCCAGGACAGTCTGGGGAGAATGGAATGCATGGACAGAAGGGAGAACCAGGCACTCCCGGACTGAAAGGAGCCCCCGGCGAGCGCGGCCGCCCTGGGTTACCAGGCGGCTCTTTGAAAAGCGACTCCGGGATGGGAATGATGGGTCCAGTGGGGCCACGAGGAGAGAGGGGCGCTCCAGGAACTCCAGGTCCTTCTGGGACCCCAGGCATCCCTGGATCACCGGGGCCAGCGAGCGCATGGCCTACTACATGTCCCGAGTGCAGCTGCCTGTGGAGATGGTGGCAGCTCCTGGCCGTCCTGGCCCCCCAGGGAAGGACGGTATCCCTGGCAGGCAGGGGTCTGCAGGGATGCCAGGGATGCCAGGTCAGATCGGGAGAGAGGGGCGGCAGGGCCCCATGGGACCCCCCGGTGCACCTGGCAGTAAGGGAGAAAAGGGAGATAAAGGAATAGGAGTGATGGGAGACATTGGACCCCCAGGAGCCCCAGGTCCCCATGGTCAACCAGGCTATGGCAAGGTGGGTGCCCCAGGTCCAGTGGGTCAGCAAGGGATCCCGGGAGTGCCAGGCCCTGCCGGGAACCCAGGGCAGCCTGGGAAAGAGGGCCGCTGCAACCCCTCTGACTGCCTCAGCATGATGCCCATGGAGCAATACCCCTCCAAGAGCATGAAGGGGCCGATGCACTAGGAGAGATGttgggagagcgagagagagagagaatgcacaAAGAGaacatcatatttttattttattttttttacctttttttttgtctttttttttcttctttttatacCACGGACACCAAAAATTAAACGATACGTGCAATGCAGAAAATCAGTAATTATTCAGTTCCTGGACACAAAACCCTGTCCCTTTCCCTTCCTGCTGGATCGGTGAGCTGGTTTGCAGACAAATCAAGTTACCAAGTGTTGTGACATCAGCAGTCTGGCTGTGGAGAGGGCCGGCCCGTCTCGCTGCCCTGTGGCACAGGGCAGTGCAGGGCACAGACCAGCCCGAACACTCAGAGTGACATACAGAGGAGATGGCGAATTAGcccttaaaaacattttttttaaagtgtatattttttttatcaagcaTTTTTTTAAGGCTACTTCTTTGGAATACTTCTCTAGCCCTCGTCGATTTTTGCTTTCTACTTGTACAGTCGTCTAAATTTCTTTTGCAAGCAGGAGCTAAATCTGTATATTGTAGGAAATTCATGTTTCAGTAATTCTGAGGTAATCTCCTGTGCTAGTGTGCACTTTATGTGCCCTGTTTTATACATGTACAAgtgaacacactcacacacgcacacacacgcacatatttGTCAAATAACGAAGCAGACACCATGTATTGATGATGCATGCGTGTATGAAAGACCAGTCCCTGTCATGAGGACACACATCAGTTGACATTTACAGCTGTGTCACACTGTAAAAACAGAGTGAGCTGTGGATCTACACACCAtcacatttttctattatttgtaccaacaatgtctttgatactTGTAGCATTCCAACATGTACCTCCTACCTTGTTTAAACCACTATGCAAAATAGTAGCAGTAGGAGTTCTGTGTGAAAGACCTGGACTTACGCAGGGACCCAGAGAGAAGTGTCAGATCTCGATGGGGTTCAGAGATGCACACCAAAAGCAAGCAGCTCAGTCATTCTTCCTTGCAGAGGGAGGGGTGAGATGAGGACATGGCTGCCACGTCCCAGTCCCTGCAGTCTGTTATATATAGTCtctaaaaactttaaaaagacacattgtTTTAGTAAAGTGAGTGGGACCTGcggtgtacatatttatattcatattcctGAGTATTTTACAAGGTGTTTAACAGCCAGCAGCCTTTTCCTATCCCCCTCATTGCTCATTCTCCATTCTCACCAGCCCTGGGTTCCCAGCCTTTCAGAAAGAAACACATATTTGAtaagcaattcatttttaaagcttgtctttcaaaattatttttaggattttttGTTCAATTCCTAGAACTGTCGTTTATTGATTGTACAGTCACAGAGTAATGGGTTATCTTTGTCAGACATGATCTTGCAGGGGGAGTCTTTGTGTTGTCTGTATCTATGAGCCAAACTGCTAGACCATTGCTCTTAATACAGCCTATAGCCCCTGTCTTCTCATTGTATTAGTTTTAAAGTAGAGATTTTTTATGCCTTTCTGAAATGTCACATCTTTGTTGTAACAGCGCTTGTTTGCAAGTAACACACTTGAATTGTACTGTATTCACTACCTGCGACCTGCAAGATCTCCTGACCTCTGCAATTGCATTCCATGTGTGTGTCAAGGCCGGTGTAAAAGCCATCAATCAACAAggatatttttacttttatttttttattatggaaactgaaacaaaaccaagcaAAACGAATATGCAACAAAAAAGCTAATAAATATTTTGAGCAAAGTTGAGTGAAATCAAGGCTCTTAATTCTCTTGGCGTCTGCGctgcaatgtatttaaaaataatggtgACGGTTGAACAAACCGAAGGTGCAAATCTCTGTTTTTGTCCGTGTGCCATACCAGCCAGCACAACCCACAAATCCTGATATGATGAGGGGAAAGCACTGTGGGCCAGATTGAGGTTTTGCAAACTACCCAAGCTATGGAGTTGACTGTGTAGTCAATTtctatgtaatatatatttgttatttttaaatcaacaatttATTTAGCCCTCAGTGATATACATGTGTGCGCACGcgagcgtgtgtgtgtttgtgcatgtgtataaatatgtatagctGCTGGCAGCAGGAACCCGAAGACTGCTTTGGGCTCCTCCGAGGGAAGTTGGCGAGTTCTGTCTGAAACAGTTGCACTCTTGGGGTGAAGGGGGTTGAAAGAGTCCAGCCACAGTAAAATCAAGGCACTTTGACATAGCAATACTGCAGCTgtgacaaaacaccaagcacaggACTGAGCCGGCAGAAACATCACAGCGATATTACCAGTATGAACGGAAAAGCTGGACGATCAACTTTGTACACCAACTGGATCTAATGATAACTGCACCACTGTCTGATGGGCTCACTCACACATTGAGCTTAGCAATTGAACTTACTTGATACAGATGTGATTGCAGGTTAATTTTGTAAGATTGCACCTGGTGtctgttaaatacattatagtAAACCACATATATTGTTGCTGCAGTGCAGAAGTGAGCCTGAATATTTTCTCTAAGGGCATCTTTATTGGGTTTTGCTGTCATTGTTTAGGTTTTACATTGTCATTTATAAGCTATGTGGTTTCATTTCAAGTGGtttactatattatattattttgtttattttttatatgtattctgCCAATCTTCCAAATCTGTATATCTGAATTTGGGATCCAAATGTCTGTAAAGTTTCCCTGGCAATTAACAACAggagatgtatttaaataaatcttaaatattttaatcatatttagTTTCTTCTCGGCCATCTTTGTATTTCAGAACATCCTGGGATTTTCCTCCAAATTTGCGGTTGTTTGATAAAGATCTGAGAATTGAAAACTCAGACCTCTAGCCTGCTAAAGCTACATCATaggtttttcagattttt

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130347 lncRNA upstream 628012 10723550 ~ 10723890 (+) True G104271
TU130328 lncRNA upstream 734706 10555729 ~ 10617196 (+) True G104255
TU130296 lncRNA upstream 1080039 10269804 ~ 10271863 (+) False AMCG00011089
TU130278 lncRNA upstream 1479012 9872653 ~ 9872890 (+) True G104221
TU130260 lncRNA upstream 1605038 9693144 ~ 9746864 (+) True G104204
TU130396 lncRNA downstream 2857 11372554 ~ 11377085 (+) True G104307
TU130401 lncRNA downstream 48969 11418666 ~ 11420066 (+) True G104310
TU130425 lncRNA downstream 163223 11532920 ~ 11593994 (+) True G104326
TU130484 lncRNA downstream 274320 11644017 ~ 11651021 (+) True AMCG00011110
TU130570 lncRNA downstream 474713 11844410 ~ 11844623 (+) True G104443
AMCG00011100 mRNA upstream 4891 11303064 ~ 11347011 (+) True AMCG00011100
AMCG00011099 mRNA upstream 99054 11219888 ~ 11252848 (+) True AMCG00011099
AMCG00011098 mRNA upstream 179931 11136716 ~ 11171971 (+) True AMCG00011098
AMCG00011096 mRNA upstream 227849 11093835 ~ 11124053 (+) True AMCG00011096
AMCG00011097 mRNA upstream 258074 11039056 ~ 11093828 (+) True AMCG00011097
AMCG00011102 mRNA downstream 30152 11399849 ~ 11412952 (+) True AMCG00011102
AMCG00011106 mRNA downstream 103102 11472799 ~ 11490031 (+) True AMCG00011106
AMCG00011109 mRNA downstream 129868 11499565 ~ 11500270 (+) True AMCG00011109
AMCG00011107 mRNA downstream 157513 11527210 ~ 11530729 (+) True AMCG00011107
AMCG00011105 mRNA downstream 173291 11542988 ~ 11552978 (+) True AMCG00011105
TU130349 other upstream 532479 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 1818488 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 2799297 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 4430971 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 4709274 6641983 ~ 6642628 (+) True G103542
TU130500 other downstream 296501 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 439149 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 472432 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 696797 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 1155663 12525360 ~ 12527031 (+) True G104694

Expression Profile