RNA id: AMCG00011103


Basic Information

Item Value
RNA id AMCG00011103
length 3366
RNA type mRNA
GC content 0.52
exon number 27
gene id AMCG00011103
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11369700 ~ 11395747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCGGGTCAGTGTGGGAGCTCAGTGCTGGGGTCCATAAGCGTCCTGAGTTCTCAGGGGCTGGATGTTGGGCTGGgttcacattatttattagatttttgaTTTATTCGGTGAGACATTCCTGCTCCTCTGGAATACTGCAGTCCTGCTCTGAGGCCAGGTGTGGAGGTGCTGCTGGACGCTTTGTGAACCAGAAGCCCTTACCATGGCTGGAAAATTAGGAGCCCTCAAGATCTTCCTGCTCCTGCAGTTGGTCTGCCTGACACTGGCACAAGTTAGGGGTCCGCCAGGTGAACAGGGACCGGTCGGCCCTCCAGGCCCCTCAGGAACCCCCGGGTCCGATGGCATTGATggtgATAAAGGACCTCCCGGGCCTGCGGGTCCAGCGGGCTCGAAAGGGGAGCCAGGAGAGCCAGGCCCTGATGGTATCCCAGGAGAGGCCGGCATTGATGGTCTGACTGGAGCCAAAGGAGACAGAGGTCCTGTTGGAAACCCTGGACCCAAGGGCCAGCCTGGTCCTGTTGGGAAAGCCGGGCCCACTGGCCCTGGACTTCCGGGACTGCCTGGTCCTCCTGGTCCAATCGGCCTTCCTGGTGAAATCGGCCGACCGGGAATAAAGGGACCTCCGGGCAAGTTTATCGCCGAGGAGGGCAGTGCTGACTTCCAGTGTCCGACCAACTGCCCAGGTGGGCAGAAGGGGCCTCAGGGGCTGCAGGGGGTGAAGGGACACAAGGGCCGTCCAGGAGTTCTTGGGGAGACAGGCAGTCTTGGGAAGCtgggcacAAAGGGAGAAGTGGGAATCTCTGGTGAACAAGGAATCCCAGGCCCTCCAGGTAAGGAAGGACCACAGGGCCCCCCTGGTGATGCAGGAGAGAAGGGAGATGTGGGAGGGCGTGGAATTCGTGGGCTACAGGGCGGCATTGGTCTGAAAGGAGAGAATGGTCTACCGGGAATTGATGGAAAAGATGGTACCCCTGGCATTCCGGGCATGAAGGGAGGACCTGGACAGCCGGGGATGCCTGGGCCTCCAGGCAACCAGGGGACAGCAGGTTTACCTGGCAGCCCTGGCATCAAAGGTGGCCTGGGAGACAAGGGCATTTCTGGGCCAAGAGGTTTTCTTGGAGTGTCTGGGGCTGCTGGGCCTCAGGGAGAGCCAGGACCTCCTGGAGAGCCTGGGATGCAGGGAGTTCCTGGGCCCAAGGGGATAAAAGGCGAGCGCGGGCCAGTGGGAATCCCAGGACCACAGGGAATCCCTGGAGTGAAGGGAGACAAGGGATTCCAAGGAAAGGTCGGACCGAAGGGAGACTTTggagACCCCGGTGTAGAGGGTCTTgggggagagaaaggagagCAGGGACCATCTGGAGAGCCCGGACCTAAAGGCcagCAAGGTGTGCGTGGAGATCCAGGGAACAATGGCCCCACAGGAGACCCAGGGAAGCCAGGCGAGCAAGGCCCCCCAGGCCTGCCCGGCCCCAGGGGCCTCTACGGCGAGAGGGGTGTGCCTGGGATGCCTGGACGACAGGGCAATCCTAGGCTGGCGGCGGTGGCGGTGAGCGCAAAGAGGGCTGTTCTGGGCGGAGCTGGCGTCATGGGACCCCCCGGACCCCCCGGCCCTCCTGGCGCTCCCGGGCCCCAGGGACCTCATGGCCTCACAGGACCCAGAGGAATCCCTGGGATGCTGGGTGCCTCTGGGCAGATCGGAAACACCGGGCACAAAGgaaAGAAGGGTCCCAAGGGTGAACGAGGGGACCCAGGCCGTCCCCACCAGGGTCAGCCAGGTCCACCAGGTATTCCAGGCCCTCCTGGCGTGGACGGGTACGGCCGGGACGGGAAGCATGGCGAGCAGGGTCCCCAGGGCTCGCCGGGTGAGAACGGACACCCTGGCCGTGTCGGCCCACTGGGTCTCCCTGGGTTCTGCGAAGCAGCAGCGTGTCTGGCGGCCTCGGCGTACACCTCGGCTCGGCTCTCCGAAGCGGGCACCATCAAGGGGCCGTCCAAGTAAAGCGTAGATGAAGACGGCACCGGGGGGAGACAGACGCCCGAGAAGACAGAGGGAAACCGCCACGTCCCCCCAGTGTCAGCCCTACCCCACCGCTCCTCGCCACGACGGGAGCCAACGAGAGACACATGAAAAACACCAGTCAAAACCGTCTTGGACTGAGACAACTGAACTGAAGAGAGAGACTTGACTCCCAACTATTGGTGCTTTCTATTGTACCATggtcaatttaaatgcatttttgtccatttttgttttgttttgatttttttctgccttttttattttaagattataaataGAGACACTTCAGAGCCACCATCCCTACCCCACGTcattaaagtgtaaaaataattacagaaattaccaataaaataaagactatGATAGTATAAGGCAATATTCAAATACCTTTGTAAGATTCATTGTTAATTACCTCATGCGAGACTGTAAAATGCTTGTTTCCTTCCTCTTTGTTTCTCCTTAATGctgtctgtttgttgttttgtttaattaacttcaTTTAGAGATCAATTAACTTTTTTCTGCTTCGATAGAACAGCATTCCCTGATTGACAATCGCCCGATGATTCAGTGCTGTAAAtctttgtaaatgtgtgttaattttatatatataaaaagtgggttttcaatgcaaaaaataaataaaataattaacaatgatAATGAAGGAAAAACCCAATGTTAATGAACttaatcagcattttttttcttaatttcaatcAGGTTATCTAACTACTTTACTGCTACCAAGAAAACTAAAAGCTAAAAACCAAAAGGATTAAAAGCCACTGTCTAAACACAAGCATATGTGAAATATGTCAACTGAAATATCAGAgactgaactgaaactgaaaaggaaaaaaaatgattagttTCATTAACAgaagttatttattatgttctgCTATGTTTGTTCAACTGTAaagactttttagtttttttgattTTTCAGTGCAACCCGAATCAATAAAGAGGAACGTTTTGTAAAAGAGAAATTCTTCTGTATCGAATGGGAATGATGGTGAAGAACGCAGCTTTTTAAATTTTCCCCGTGAGTACATCACCTTCTTTGGCTCTAACCACCTTCTCTACTTCTTCTCTGCGTAATAAAATTATACTGTCCAAACGGTTGGCAATCGTCCACAATTATTTAATCCTGGCAGCACAGGGATGTgccaagaagaaaataaaatgccatcAGTGTCACATGATCAGTTATCCTggactgaaataaatatgtttccAGTAATCATGGACCTTTTTTGATTCACATGCTTAGACTTATGAGGTGGGGTTGTAGGTGGATATGGAAATAGTTTGCTAATGAACagttgagggaaa

Function

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130354 lncRNA downstream 423426 10946001 ~ 10946274 (-) True G104278
TU130348 lncRNA downstream 645744 10723590 ~ 10723956 (-) True G104272
TU130156 lncRNA downstream 1956778 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 2104213 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 2404121 8965372 ~ 8965579 (-) True G104055
TU130406 lncRNA upstream 20443 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 25002 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 115476 11511223 ~ 11593619 (-) True G104341
TU130445 lncRNA upstream 191311 11587058 ~ 11594342 (-) True G104342
TU130492 lncRNA upstream 253258 11649005 ~ 11656833 (-) True G104376
AMCG00011092 mRNA downstream 890552 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011085 mRNA downstream 1616210 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011083 mRNA downstream 1619801 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011086 mRNA downstream 1627077 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011084 mRNA downstream 1750421 9601377 ~ 9619279 (-) True AMCG00011084
AMCG00011104 mRNA upstream 35959 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011112 mRNA upstream 257255 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011114 mRNA upstream 269377 11665124 ~ 11694330 (-) True AMCG00011114
AMCG00011113 mRNA upstream 308342 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011119 mRNA upstream 405014 11800761 ~ 11805757 (-) True AMCG00011119
TU130270 other downstream 1625915 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 1766959 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2133507 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2506034 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 599666 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 671718 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 930350 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 1040124 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 1152542 12548289 ~ 12548993 (-) True G104715

Expression Profile