RNA id: AMCG00011106


Basic Information

Item Value
RNA id AMCG00011106
length 4211
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00011106
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11472799 ~ 11490031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGCTGCAGGCTTTCCAGTCCAGGCACCGAGCGAGCAGCTCTCTGTGCGCCACCTTTTGTTTGTTCCCGGATTGGGGTAGAGCACAGCTCGCCTCCTGCTCTGTCTTCCCTTGCCCAAGGAGACCATTACAGTGCAATGCAGGCTTGGCGGCAGCAgtgggagcagcagcaggacagCTGGAGTGCAGGGTCGGTGTGTTGTGTGGTCCGTGTTGTTCACCCTTCCTCCCCCCGTGCAGAAGGTGCTGTCCTGTCCTTCCAGGGTACAGAGCAAGAGATGGCATGTGAGAGTGAGAGGCCATCAGTTTTAGCCTTTAGTACTCTGCTCTTTGTGGCCATCGTATCGGTAGTGAGAGGGGCCTGTTCTGCTGAGCGCTGTCGCTTTCCTACAACGGAAGTGGAGCGAGAGTCTTCCTTCTATTACAACATCAGGAAGGTTCGAAAGCAGGGGAGACCATGTGACCCAGTCATTCTTGTGCTGCAGCTGCAGGCACCTGGTGTCAGGATGTCAGCGGAGAGCGCGTTTGGAGCGGCGGGCAGTGATGCCCAGCAGAGCCTGCAGTCCTTCTGGCCTCGTGTGATGGACGAGATCAGGAACCTCACTGTGAAGGACTTTCGTGTTCAGGAGCTTCCTCTGGCTCGCATCAAGAAAATCATGAAGCTAGATGAGGATGTGAAGATGATCAGTGCTGAAGCCCCAGTCCTGTTTGCAAAGGCCGCTCAGATCTTCATCACAGAGCTGACACTGCGAGCCTGGATCCACACGGAGGACAACAAGCGCCGGACACTGCAGagaAATGATATCGCAATGGCCATCACCAAGTTTGACCAGTTTGATTTCCTGATTGACATTGTTCCCAGAGACGAGCTGAAACCTCCAAAACGACAGgaGGAGGTGCGGCAGTCTGTGGCACCGGCGGAGCCTGTGCAGTATTACTTCACGCTGGCGCAGCAGCCCGGAACGGTGCAAGTCCAGGGGCAGCAGCAGGGCCAGCAGGCCAACGCATCAACCACCACCCTGCAGCCTGGACAGATCATCATCGCACAGCCCCAGCAAGGACAGGTGTTGCAGGGGACCActgtgcagcagctgcagcaggtgCAAGTGGCACAGTCCCAAGCCACAGCCTCGTCCATCACGAGTGCCCCGGTCACTATGCAGGTGGGGGAGGGGCAGCAGGTGCAGATCGTGCAGGCTgcgcaggggcaggggcagggccAGGCTACCACCGGCCAGACCATGCAGGTCATGCAGCAGATCATCACCAACACCGGGGAGATCCAGCAGATCCCGGTGCAGCTCAACACCGGGCAGCTGCAGTACATACGGCTGGCCCAGCCCGTGTCCGGGACGCAGGTCGTCCAGGGGCAGATCCAGACCCTAGCCACCAGCGGACAGCAGATCTCGCAGACGGAGGTGCAGCAGGGCCAGCAGCAGTTCAGCCAGTTCAGTGATGGACAGCAGCTGTACCAGATCCAGCAGGTGACGATGCCAGCGGGGCAGGAGCTCAGTCAGCCCATGTTCATTCAGTCTACCGGCCAGAGTGCAGATGGCCAGGTCACCACGCAGGTCAGCGCTGACTGAGGTCCACACGGTGCCAATGCTGAAGGCTGAACCGCAGGAGCTTGCAATAACAGACTGGTCCAAAAACAGAGTCCACCCATTTGTCTCCTCTCTCGTTCGCTTTCTTGGCCAATCCCTTTTAATACCTGTCCACACTCTCCCGTCCTGTCATTCTCCTTCCCAGTCACTCTGTttatccctctccctccctccccttcaCACACTGCCtcacccatccatccatccctctctctctctctgatcttCTCACTGTGTTcgtgtgctttatttttttggtctGACTTTGagtttctttaaatattgtatttctttaaatgtccACTGGTAATGGGTACAGGATGCCTTTTTGAGGTGGAAGAACTTTGAACTGAGTTTTTAGCCCATCCAAGACCAGGGATCCAGTGGAGttctgtgtatatacacacacgcacatccagctccctccctccccttgaTACTGCATCTGACCTCTCGCTGTCAGGGCTTCTCGCCTCGCCTCCGGGTCATGGAGAGCTACAGCACAGCAGCGCCCAACACCATTCAAACTGTCCCCCCAAACCCAGGGATGGTTTAGTGccaataaaaatgacattatatttattaggtttttttttatgattagcGTTTCTCTTCACCAAGGATACTGGAGGAGGTTCTCTGACTTGGGGCTGCCAGTATACGAGTGTCAGTAGAGTAGAAATCTTctcatttatatgtatgtattttgttgttgttgggtgGGTGGGTCGGGGGGTTTGATAGGGCTTTGTTAGTTACCTTCAGTTTTTAATCCTGGTTTTCATTGTCCTtacaagaaaggaaaggaaaaaataaaaacgtaatGACACGCTTCTCTGCAGATGTAAACAGTCCGATTTCTGATGTTGACAGGTTTAACTTACTGAAACTGTGAATTTCAgggtaaaacacacaaaacgcCTGCAGATTGTAAAGatagtgtttctttcttttgatcTGAAACCTGATCTGTGGCAGCTCATTTAAACCATTAAGAATGACTAACTTCtctatggttttatttttgaaatactaCATTTTGGAAGAAAGTAGGACACATAGatgtacacattatatataataaaaacccATGTGTCATACTAATCTACtatgcagtgtgtttgttttccaactgCTGACTGAGGCACAGTGTCCTCTTGGCCTCAGATTTTAAACCCATCCAGATAAAGATTAATCGAAAGTAAAATGTTGCCTGCATTAGTTGTATCGGACGTAACACACGTGCTACAAGCaatttgtgacttttttttttttgtttttccttccacgctggtggttttcatttttatagattttatttaaaaaaatgttgcagtTAACTTTTTTTCTACTGCTGACTAAGCAACATTTGACATCTGcacattgttgttttccttgttcTTCTCGGTTTCTTGTGGTGCCCTTTAACTGAAGTTTAATGCTCTCCTGCAGAAGGAATCAGGTGTTGAAATCCGCCTTCCTGCTGGGATTGCGGTTGGTAGGGGAGTGTGTCCGTGTGACGTGGAAGCGAGACCCCAGGGACAGTTATGAAGCATGTGTAGGTGTGATGGGTGGGGTTAGCCTGGCAGGGGAGGCGAGGGGGGTGGGAGATATTACCCCACatgagcagtgcagtgtggttgtTTTAAGGTACGCTAATGGAGGTGGGCCTAGAGCCATGgcatttttctatatatttttttttgtatttgtctaaTTTTAAGCTGTAAATATATGGGGGGTGAGGAAGAAAGTCTGTCTGGATCATTCTCAGATCAGGATACTGCCACACCTTCCTTTTTTGCTCtccccattctctctctcaaaaccCCTTGGTCTCCACAGGGATGGTCGGTCGGTCAGTCCTGGTGCTGGAGAGCCGTGCAGTTTTATAGCCTAACTGTCATTTTAAGTGTTGCCTGCCCCGCCCCTCTATCCCGcctcctggtttttgttcctgCGCCATCTCGGTCAGACCCTTAATCAACCTAAATTCTTGAATCACGTTTCTAGTATGACGGTCGAGTCTTTTGCAGTTCCCAGCCTAAAACATGACTTAGATTTCATGACACCTGCTGCCTGCCAGCAGTGAAGCGGCACACGACCCGCCCAGCCAGGCAGGCCCGATGAGGCCTAAGCGGAGAGCCCCGGGTCGGGACGAAAGCCAGTGGGCAGCGACACCCTCGCTCGAGACCCTGGCGGTAGAGTGGGAGGAGTTGGAGCAGGACGGTTTCTGGAAACGCTGATTTGAAGTCAATGGATCAGTCACTGCGGTCCAGATTTCCCTCCCTGCCTCCGATTTGTTTAAAGGCCCAGATGAAGCCTCCAGGATGTGCTCTCCAGCCATGCCTCTCCACCCATTTTATAATgttgatatttgtattaaatgtcttgtatttttttttttctccacttttGGATCTcccacttttttttctaaattgtacctataattatttttgtatcattgttTTGCATGTAGTTTAAACTGCCAGCATGAAATGCAATAGATCTTTATATGCATTGTTTCACTGTCTACTAAGTAtcccagctttttttttttcttccccctttttcatttgggagaaaataaaaggcaaaaagAA

Function

GO: NA

KEGG:

id description
K08066 NFYC, HAP5; nuclear transcription factor Y, gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130401 lncRNA upstream 52733 11418666 ~ 11420066 (+) True G104310
TU130396 lncRNA upstream 95714 11372554 ~ 11377085 (+) True G104307
TU130347 lncRNA upstream 748909 10723550 ~ 10723890 (+) True G104271
TU130328 lncRNA upstream 855603 10555729 ~ 10617196 (+) True G104255
TU130296 lncRNA upstream 1200936 10269804 ~ 10271863 (+) False AMCG00011089
TU130425 lncRNA downstream 42889 11532920 ~ 11593994 (+) True G104326
TU130484 lncRNA downstream 153986 11644017 ~ 11651021 (+) True AMCG00011110
TU130570 lncRNA downstream 354379 11844410 ~ 11844623 (+) True G104443
TU130571 lncRNA downstream 354655 11844686 ~ 11845805 (+) True G104444
TU130572 lncRNA downstream 355957 11845988 ~ 11846253 (+) True G104445
AMCG00011102 mRNA upstream 59847 11399849 ~ 11412952 (+) True AMCG00011102
AMCG00011101 mRNA upstream 103102 11351902 ~ 11369697 (+) True AMCG00011101
AMCG00011100 mRNA upstream 125788 11303064 ~ 11347011 (+) True AMCG00011100
AMCG00011099 mRNA upstream 219951 11219888 ~ 11252848 (+) True AMCG00011099
AMCG00011098 mRNA upstream 300828 11136716 ~ 11171971 (+) True AMCG00011098
AMCG00011109 mRNA downstream 9534 11499565 ~ 11500270 (+) True AMCG00011109
AMCG00011107 mRNA downstream 37179 11527210 ~ 11530729 (+) True AMCG00011107
AMCG00011105 mRNA downstream 52957 11542988 ~ 11552978 (+) True AMCG00011105
AMCG00011108 mRNA downstream 84509 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011111 mRNA downstream 147971 11638002 ~ 11642227 (+) True AMCG00011111
TU130349 other upstream 653376 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 1939385 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 2920194 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 4551868 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 4830171 6641983 ~ 6642628 (+) True G103542
TU130500 other downstream 176167 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 318815 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 352098 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 576463 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 1035329 12525360 ~ 12527031 (+) True G104694

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028329 False 2148 mRNA 0.48 11 NC_007130.7 42071814 ~ 42118592 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_01818544_01824351.mRNA True 609 mRNA 0.47 4 CI01000054 1818436 ~ 1824351 (-)