RNA id: AMCG00011114


Basic Information

Item Value
RNA id AMCG00011114
length 7843
RNA type mRNA
GC content 0.63
exon number 35
gene id AMCG00011114
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11665124 ~ 11694330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAGCCCCTGAGCCGACCGGACTGCCTGCGCCAGAGCCCCCGCTGCCTGGGAaagggtgaggaggaggagggctaCATCGAGGACTGCTATGTGCCCCAGCGCTCCATCTATGACACCATGCGCATCAATGAGCAAATCGACCAGGGCGGAGCGGGCAAGTTGGGGCAGCCCTCCCGCAGCACACTGGGCTCGGCTGGGGGTGTGGCAGTGGGAGCTGGTGGGGGCGATGGCAGCACCCTGTCCAGCAATGGGACGCTGGGGGGTGTTTTCGAGGCTGCCCAGgagcccccccctccccgaaAGCTGGATGAGAGGCAGATCTTCGATGCGCTGAAGCTGACGGGTGACCCCCAGAGCAAGCCGCCGCCTCTCCtgccctccgtctcctcctcctcttcctcctgctcctctgCCACCACCTCCATcattccctcctcctcctcctccaccacgGTCTCCGTCTGCCCCGGTTTGCCAGCAGTTCCCAAGCGGCGCCAGCAGGGTGGTGACCGGAAGGACAACAACCCCCATCGCCGCTCCTGGAAGTCCTTCCTTCCGCCCTCCTACCCAGAATTCGTCGAGAGGCTGGAGCTGTCCCCGGGGGACTCTGGCGAGAAGCGCCTGTCTGGAGTTGGCATCCCCCTGTCCCCTGTCCTACCTCTGTCCCCTGTCCTGCCTCTATCTCCTGCCCTGCCCTTGCCATACCTTGTCCCCCAGCCACCCCCCGTCCCTGCTCCGTCCATCCCCCCTCGCATCCCaaacctccccctcccctctacCACCACCTCTACCTCCTCCTCtagttcctcctcctcctccccactcCGTGGGCCTGGGGGCCTGCTGCCTGCGCTGATGCAGCACCAGAAACAGAACCTCAACACCGGCCTGGGTCAGGGGCACAATCCGCCGCTGCAGGACAGACAGACCCAACAGCCCAGGCCCAGACCCAAACCCACGCCACCCCTCTTACCACCCAGCCTGGCTCaaggcagggagagggagagagagggagaaagagggaaggaggaaaggagagaggcagcagtagcagcagcaacCCCCCCAGTCTGTGTCACAGGTGCTTCTCTGTGGCAATCAGAGCAGGACGAATGTGGGGCCAAAGCCAGGGAGCAGGAGAGCAACCCCCTCTTACCTTCAGGGGATGCCTTCCCCCCCTCACCAGTGCAACGGACCAAGGCCCCCCCCGGAGCCCCCAAATCTCGCACCTGGCCCCGCAGCTTGAGGGGAGGGGCCAGCAAGCTTCCTGCCCGCCACCACAACTACCACATCCTGCCCCCGCTGCCCCCACACCTAGGGGAGGAGAGTGAGGAGGAGGCAGGAGGGCTGGGCGAGGAGGGAGAGGGCGACCTGTACCTGCTCGACCCCCCGTCACCTTTCCTGCTGGACGAAGTGGGGGGCTACAGGGGCCTGCCGCTCTCACCCTGCCTGAGCCAGGAGGGGGGCGAGGGGGGGCTACTGGGGGGGCTGCTGGGGTGGCCCCCCGCAGCCGGGGAGTTGCGGGAGAGGACGGCCTCCGAGCTGAAATTCGAGGAGGACGAGAGGAagatcctgcaggagctggaggcagaggaggaagaggaggaagaggaagcaAGGAGGGAGcaagatggagagagggagcaggaggagagggagcagagagaggaaagagggtGGGAGGCTGTGCTAAAGATGGAGAGCAAGGAGAGGCCAGCTGGGAGCAGCCTGGGAGAGCCCTGGCAATACCAGGAATTTCAGAGCTACCAGcagtgggaggaggagggggagggggaggaggaggaggaggaggaggaggagggtgagaGCTCCCTGGGCTGCTGGCCTCTACTGGCACCTCCTACAGGCTTTGGGGAGCCAGAGCTGCAGCCCCCCCATGCCAAAGCCACCCCACGCCCCCCCTCCGTGGCTGGCAGCTCAGAGCCCGGCTCAGACGACCTCTTCCTGGAGCTGGAGAGGCAGTGCCTGCAGGAGGAGGATGAGCAGGGCAAGGCTGGCACAGAACCATCAGACGGGCAACCCACAGCCAACACACAGCCTGAGCTGGGGGTCGCCACAGACACAGGCTGCTCTGCTCCCTCTGAGGCGGGCaccctgggggtggggggagcagaCAGGTGGAGTGCACCCTCTGAAGCAGATTCTAACCCcagcagagaggaggaggacagcAAGGGAAATGAGGGAGAGGAGCTGGCAAACGACAACGTCTTGGTAACGCACAGTGAAGACGTGGATACTGCGTTTGTGGTGACTGACAGTTTTGTGTACCTGGCGGTTTCTGCGCCACCACTTGCCTCCTcttccacctccacctccccaTCTCCCTCACCTGACCCTCCCTGCAGCCCGATGCCACCCTTCCCCCCAAAGCTGGACCTCGACCCCACTGAGGGAGGGGCCCTCCTGGCTTCAGACAGTTTTGTGTACCTGGCGGCTCCTGAGCGCATCACCCTGTCCCGggacaatgacaatgacaacgataacaacaacaaccaccccCACGTCGTACTGCCACACGCTCTCTCCCGCCAGGACTCCTGGGAGTGCGTGTCCGGCCCCCAGAGCGGCCGTCCAGGTGAGGTGTCCTTTGTGCTGGGCGGCTCACTTTCTGGGGATGAAAGTGACTGGGACTCCCGCTCCGATGCCCTGGAGTCGCCGTCAGAATCCGAGTCGGAATCCCCATCTCAGTCGGAATCAGAAATTCGATCCAGTTGCGACTCCAGCTCTGGCTCCAGCTCTGGGTCGGGAGGGGATTACTGGGACCATCTGGAACCAGGCTTTCTCTGGACTCTGTTCCCAGAGCTCTCGGAAGTCCGTGACCTGGACGGCACTCTGTCCGAGGTGGAAGACGGGAATGTTTTGGGAATGTTGTGCCCAGAGCATACGGATCAGGGCTACCAGCCAGAGGCGCTTGAGAGGGAGCAGGTGGAGAGTGTGCAGGGGCGTCTGCAGCAGGTGAATGCGCTGGGCCAGGGCCTGATCCAGAGCGCCGGCCAGCACAGCGACACACATGGCCTGGAGCAGCAGCTGGACAGCACCAACCTGCGCTGGAACGCCCTCAACAAGAGGGTGGCGGAGCGTGTGGCGCAGCTGCAGGAAGCCctgttgcattgtgggaagTTCCAGGATGCACTGGAGCCACTGCTCAGCTGGCTGGGTGACACTGAGGAGTTGATAGCCAATCAGAGGCCACCGTCTGCGGAGTACCGTGTCGTCAAGGCCCAGATACAGGAACAGAAGCTCTTGCAGCGGCTGCTAGAGGACCGGCGCGGCACGGTGGAGATGATCCGCGTGGAGGGCCAACGTATTGCCATTGCTGCGGAGACCGCAGACAGGGACAAGATCCGTCGGCAGCTGGACAGCCTGGGCGAGCGGTGGACAGCACTGCTGGACCAGGCACAAGCCAgGCAGTGCCAGCTGGAGCAGCTGCTGGAGCTGGCACACCAGTTCCATGAGGCGCTGGAGCCACTGGGTGAGTGGCTGGGCACAGCGGAGAAGAGGCTGAGCAGCGCAGAGCCAACCGGCACCCAGACTGCCAAGATCTCCCAGCAGATCGCCCGGCACCGGGAGGAGGTGGAATCTCGGGGGCCAGAGGTGGAGCGTATGGAGTCCCTCAGCCATTCGCTGTCCCTGCTGAGTTGCGAGGTGGACCGTGATTGGCTGAGGGAGCGGGTTGGGGCGGTGCGTGGGGGCTACGGGGAGCTCAGCGATTGGTGCAAGCGGCGAGCAGCCATACTGGAGCAGGCACTGGCCAACGCACGCCTGTTCGGCGAAGATGAGGTGGAGGTGCTGAACTGGCTGGCAGAGACGCAGCAGCGCCTCCCAGTGGTCACTGTGCCTCACTACAGGCAGGACCTCCTGCAGGAGCAGCACACCTTGCTACTGtcTCTGAATGAGGAGATCCTGAGCAGGAAGAAGACTGTGGACCAGGCAGTGAAGAATGGTCAGGAGCTGCTCAAACAGACCACAGTGCTAGACACGGTGGACGAGGTGGGTAACGCCCTGCTGGAGCTGGTGCCCTGGCGTGCCCGTGAGGGGCTGGACCGCTTGGTCGCCGATGCCAACCAGCGCTACCGCTCTGCCAGTGATGTCATTGCCCAGCGGGTGCAGCAGATCGACGCTGCCATCCAGAGGTCACAGCAGTTTGAGCAGGCTGTGGATGGAGAGCTGTGCTGGGCCGGGGAGACGCAGAGGAAGCTGGCATCGCTGGGGCCACTGGGGTTGGAGCCCGAGGTGGCTGGGGCTCAGCTGCAGGTGCAGAAGGCCTTCACCATTGACATCATCCGGCACCGGGACACTCTGGACCAGCTACTCGCCTCGCGGGCTGAAATCCTGGACAGTTGTACCCCCGAGCAGAGACAGGCACTGCAGGATAAGGTGGACTCTCTGAGTGAGCGCTATGAGGAGCTGGCCGCCCTAAGTGACCAGGGGGGTGCGCAGGTGAGCCAGCACTACGAGGAGGCTGACCGGCGCTACAGCAACATCAAGGACGAGGTCAAGCGCAGGGCGGCTGCACTGGACGAGGCCGTGTCGCAGTCCGCACAGTTCCACGATAAGATAGACCCCCTGCTGGAGACGCTGGAGGGGGCGGTGTCCCGGCTACGACAGCCCCCACAGATCCCGGCGGAGGTGGAGAAGATCCGGGAACAGCTGGCCGAGCACCGGTCCTCTGGGCTGGAGCACGACAAGCTGCTGCCTAGCGTCACGGCCCTGTGTGCCCGAGGGGAGGAGCTGGTGTCCCGCTCTCAGGGCTCAAACACTGACCCCGCCGCccaggTGGTGGAGGCCGGGGTGGCCCGTCTGCGGGCGCTGTGGTCGGAGCTACGTGGGCGAGCAGAGGAGCGAGAAGGGAAGCTGCTGGACGTGCTGGAGCTGGCCGGCCGCTTCTGGTCCGACGTGGCAGCGCTGCTCAGCACGCTGCGCGACTCTCAGGACATCGTGCGTGAGCTGGAGGACCCCAGCCTCGACCCGTCCCTCATCAAGCAGCAGATCGAGGCGGCTGAGgcCATTAAAGGGGAGACTGACGGCCTGCGTGAGGAGCTGGAGTTTGTCAGGACCTTGGGGGCTGACCTCATCTTTGCCTGCGGGGAAACGGAAAAGCCCGAGGTCAAGAAGACCATCGacgagATGAACGCCGCGTGGGAGGGTCTGAACCGGacgtggagagagagaatggagcGCCTGGAGGAGGCCATGACCGCCTCACTGCAGTACCAGGATGCACTGCAGggtATGTTTGACTATCTGGACAACGCAGTGATTAAGCTGTGTGACATGTCCACCGTGGGGACAGATCTCAGCACCGTGAAGCAGCAGATCGAGGAGCTCAAGctGTTCAAGGTGGAGGTGTACCAGCAGCAGATCGATATGGAGAAGCTCTGCCACCAAGGGGAGCTGCTGCTGAAGAAGGTGGTGGACCAGGCAGACCGAGACATGATCCAGGACCCACTCACTGAGCTCAGACACCTGTGGGAAAACCTGGGGGACAAGATCACTCACAGACAGcacaAGTTGGAGGGGGCTCTGCTGGCTCTGGGTCAGTTTCATCACGCCCTGTCCGAGCTGCAGGCCTGGCTGAGCCACACGCAGCGCACCCTGGACAGCCAGCGGCCCGTCAGCACTGACCCTAAGGCCATCGAAATTGACTTGGCCAAGCACAGCgtgctgCGGAACGATGTCCTGTCCCACCGCTCCACAGTGGAGACGGTGAACAGGGCAGGGGAGGAGCTGCTGGAGTCCAGCCCTGGGGAGGAGGCGGGCACGCTGCACAGTCAGCTGTCAACTGCCCGGCCCACAGGGGGCCTTCCCGAGACCGCCCGcgagcagctgcagcagcacatGGAGCTGCAGTCCCAGCTGGCAGGCCGATTGGAACAGCACCACCGGCTGCAGGATCAGGGTCAGGCCATGCTGCTGGCCCGTGGGGAGGAGGCCATGTCCGGCTCCAATACCCAGCAGAACTTGGCGCTGCTGGAGGCCAAGTGGACCAGCCTGAACACCAAGATGGAGGAGAGAAGGGCTAAGCTGGAGGAGGCGGTTTCCTTGGCGACGGGCTTCCAGGCATCTCTGCAGGACTGTATTAACTGGCTGACGCAGGCGGAGCAGACTgtGTTTGTGAACGAGGTGAACTCTCACAGGGAGCAAGTGCTTTACCTGGAGAAGGTGGGGGCGCAGATCCGGCTGGCCAGCCAGAAGCAGGATGTGGTTCTGATCCGAAACCTGCTGCTGAGCGAGTTCCAGAAGGCCCTGGGCTCGAAGCAGCCTGTGTACGACACCACAGTGCGCTCGGGCCGCGCCATGAGGGACAAGAGCACGCTGCCCGGGGATGGACAGAGACTAGATACCCTGCTGGGAGAAATCAGAGACAAGTGGGACACTGTGTGTGGGAAGAGTGTGGAGAgGCAGCATAAGCTGGAAGAGGCGTTGCTATTCTCGGGTCAGTTTGCGGACGCTCTGCAGGCGCTGGTGGACTGGCTATACCGTGTCGAGCCACAGCTCAGCGAGGACCAGCCGGTGCATGGGGACCTGGACCTGGTCACCAACCTGATGGATGCCCACAAGgtgtTCCAGAAGGAGCTGGGGAAGCGCACAAGCAATGTCCAGGCGCTGCGCCGGTCTGCCCGTGAACTCATGGACAGTTCCCGAGACGACACTGCGTGGGTGCGAGTGCAGATGCAGGAGCTCAGTCACCGCTGGGACACTGTGTGCGCCTTGTCCGTGTCCAAACAGACACGCCTGGaacacgcactcacacagGTGCTAACATGGGCCAAACAGCACGAGCAGAGACTGGAGTCCGCCCTGGCTGAGCTGTTGAGCAATGCTTCGCTATTGGAGGAGCTCTTGTCATGGCTGCAGTGGGCGGAGACAACCCTGGTGCAGCGCGACACAGAGCCCCTCCCCCAGAATATCGACCAGGTCAAGGGGCTAATTACAGAGCACCAGGTGTTTATGGAAGAGATGACTCAGAAACAGCCGGATGTCGATCGTGTGACAAAGACGTACAAGAGGAAGAGCACGGAGCCACCAGGCGGGCTGGCTGACAAGCCACGCACACGAGGTCCACGGGTCATCCAGCTCTCTGGCCGCTGGCAACAGGTCTGGCTGCTGGCTCTGGACCGGCAGCGCAAGCTCAACGATGCCCTTGACAGGCTGGAGGAGTTCTTCCTTGGAAACCAGtttggGGACTCTCAGCAGCTGCGTCTGGTTCGTATTCTGCGCAGCACAGTGATGGTGCGCGTGGGTGGGGGCTGGATGGCACTGGATGAGTTCCTGGTGAAAAACGACCCCTGCCGAGGTTCAAAGCTGAAGCGCCCTGCCTTCCACTCCAGCCGTGGCTCTCTGTCCGGGGAGAACGGGGCCCAGGGCACCCCCACCTCCACCAAGCCTGGCCGCATAGACTCTAAACGGACAGGTACCTCTGCCAGTGGTCCAGCGAGCCGTGCGGGCAGTCGGGCGGGAAGCCGGACGGGCAGCCGGGCCAGCAGTCGCAGAGGCAGCGATGCCTCGGACCTGGAGCAGCTTGAGACGCAGTCCGCCTGCTCCGACGCCTCCGAGCACAGCACTACGGGGGGGCGGCGGCACGGGcgATTCAATCACCACGACAACAACGACACCACCACCCAGGAGATCTGTGAATGAACGaccacaacaacaaccataACGACGACAACAAGAGCTGCAATTGCACTGCATGAGCTGAAGGCAGCGACGGGCCCAGAGGGACTCACGGACTcgaggacagacagacagactgcgGCATGAAGCCGGAGCTGCAAGACtgccctccccccaccccccacccccacccgcG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130492 lncRNA downstream 8291 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 70782 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 71505 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 238899 11420749 ~ 11426225 (-) True G104319
TU130406 lncRNA downstream 245021 11416190 ~ 11420103 (-) True G104315
TU130673 lncRNA upstream 264908 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 283021 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 296499 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 344839 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 382398 12076728 ~ 12144122 (-) True G104568
AMCG00011112 mRNA downstream 3825 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011104 mRNA downstream 230743 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011103 mRNA downstream 269377 11369700 ~ 11395747 (-) True AMCG00011103
AMCG00011092 mRNA downstream 1185976 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011085 mRNA downstream 1911634 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011113 mRNA upstream 9759 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011119 mRNA upstream 106431 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011118 mRNA upstream 144930 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011117 mRNA upstream 160901 11855231 ~ 11860000 (-) True AMCG00011117
AMCG00011124 mRNA upstream 178274 11872604 ~ 11891098 (-) True AMCG00011124
TU130270 other downstream 1921339 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2062383 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2428931 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2801458 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 301083 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 373135 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 631767 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 741541 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 853959 12548289 ~ 12548993 (-) True G104715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029466 False 16194 mRNA 0.53 95 NC_007130.7 35041245 ~ 35229336 (-)