RNA id: TU130563



Basic Information


Item Value
RNA id TU130563
length 946
RNA type TUCP
GC content 0.55
exon number 3
gene id AMCG00011115
representative False

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11808846 ~ 11810822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATTATCGTAAAGTGGAGGTGTTTTTCAACAAGGGCAAAGCGACTCCTCCAAGTCTGAGGTAAATAGGCGCAGTCTTCTTGTTCGGTAGCGGGTTTCGGTTCCGTTTGTCGTCGCCACGGTGTCTTAATGTGACAGTAGGGACGGGGCAGCCGTTTACCGGAGCTTTAAAAGAACCATGCCGTTCGTTGACCTCCAGGGGAAGCTGGGCTTGACCCTGGATCGCTGGATCCTGGCACAGAGCGGGGAGCAGCCGTACCGGCGTGCGGCGCGCTGCCATGCCTTCGAGAAGGAGTGGATCGAGTGTGGGCACGGCCTGGGCCTGACCCGCGCCCGCCAGGAGTGCCGGCTGGAGTATGAGGACTTCTACGAGTGCATGCACCGCCAGAAGACGCACAAGCGTCTATATGAGATCCGCGCACAGAAGGAGAAACTGATGAAGGAGGGGAAGTACACTCCCCCGGACCATCACACAGGCAAGGAGGACCAACGGCCCTGAGATGGCACAAGCAGGCAGAGACACAGGGCACCACCTGCCAGTTGGGGGGAGACATCACAGTCTCGACACTGAAGACTCCTACACTGCACCGCCATCGCAGCCTCAACATTGTCCCACCCCCACTGCCACTGGTGCCTGGTGTCAGGCTGTACCATTTGAGCACAGCCCTGATTCTGCAGAGGCAGCCAGTGCAGGGTCTCCtgacatgtatatttatattttgtgttccaGACTCCTCCGCAAACCCTCACTAAATTAATGTGTCCGTGCCGAACCAAACTGGTCACTGTGTGGGCAGTCAGAGACGCTCCTGGGCTGCAGGcttgtttgtctgcttttaCATTTGGCTGGAGAGTTTTCCCCATTTACTGCTGATTTCCCCTCTGTTTACTGCTGTTGATTCGTCTTCTGCACTCAGTTGTGTAATAAATGCGGGCTGTGAGTTTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130484 lncRNA upstream 157825 11644017 ~ 11651021 (+) True AMCG00011110
TU130425 lncRNA upstream 214852 11532920 ~ 11593994 (+) True G104326
TU130401 lncRNA upstream 388780 11418666 ~ 11420066 (+) True G104310
TU130396 lncRNA upstream 431761 11372554 ~ 11377085 (+) True G104307
TU130347 lncRNA upstream 1084956 10723550 ~ 10723890 (+) True G104271
TU130570 lncRNA downstream 33714 11844410 ~ 11844623 (+) True G104443
TU130571 lncRNA downstream 33990 11844686 ~ 11845805 (+) True G104444
TU130572 lncRNA downstream 35292 11845988 ~ 11846253 (+) True G104445
TU130632 lncRNA downstream 103798 11914494 ~ 11917031 (+) True G104479
TU130634 lncRNA downstream 106992 11917688 ~ 11918147 (+) True G104480
AMCG00011110 mRNA upstream 159883 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 166619 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011108 mRNA upstream 221640 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011105 mRNA upstream 255868 11542988 ~ 11552978 (+) True AMCG00011105
AMCG00011107 mRNA upstream 278117 11527210 ~ 11530729 (+) True AMCG00011107
AMCG00011116 mRNA downstream 23148 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011122 mRNA downstream 132903 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011121 mRNA downstream 151702 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 176166 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 223601 12034297 ~ 12038373 (+) True AMCG00011133
TU130500 other upstream 137506 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 989423 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2275432 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 3256241 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 4887915 6917766 ~ 6920931 (+) False AMCG00010990
TU130558 other downstream 31433 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 255798 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 714664 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 799433 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 1131684 12942380 ~ 12943082 (+) True G104815

Expression Profile