RNA id: AMCG00011117


Basic Information

Item Value
RNA id AMCG00011117
length 1736
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00011117
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11855231 ~ 11860000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCCCAGCAGCCAGCTCGACGAGAAGGTGGCGGAAGTAAGAAAGGGCATCCGGGCCATTCTGCTGGGACCCCCCGGAGCCGGGAAAGGGACTCAGGCTCCTCGGCTGGCCCagcagtactgtgtgtgtcaccTCGCCACAGGAGACATGCTGAGGGCGATGGTGGCCTCGGGATCGGAGCTAGGTGCCAGGCTCAAACACACCATGGACTCTGGCAAACTGGTCAGTGATGAGATGGTGGTGGAACTCATTGAGAAGAACTTGGACACGCCCCCTTGTAAGAATGGCTTCCTTCTGGATGGTTTCCCTCGCACAGTGAAGCAGGCAGAGATGCTGGACGACCTGCTGGAGCGACGCTTGGAGAAGCTGGACTCTGTGATCGAGTTCGCTGTTGATGACTCGCTGCTGGTGCGCCGGATCTGCGGCAGACTGATCCATCAGCCCAGTGGGCGCTCCTACCATGAGGAATTCAACCCCCCCAAGGAGCACATGAAGGACgatGTGACAGGCGAGCCTCTCTCTCGGCGCTCTGATGACAATGAAAACACACTACGCTCCCGCCTGGCTGCCTACCACACCCAGACCACGCCGCTGGTGCAATACTATAGTGCCCGTGGGCTGCACCATGCTGTGGATGCCAGCCTGACCCCCGACCTAGTCTACGCCAGCATCCTCGCCGCCTTCTCCCGTGCCACCTGTAAAGACACCGTCCTCTTTGTCTAGACCACTCACTTGCTCGctcgcttgctctctctctggtcttACTCTCTTGTCATCTTtcagtgcatctctctctctgcgttgTTGTCTCTCAATGTCTTTCTCTTATATTTCTGTCTGGCAGTGTGCGGGGCAGCTGATGTGCCCCCTGTGTGCAGGCTCTCTCCCAGTGCCTGTGACACCATCTCTGCACCTGTTCTCCTGGTCTGGGGGGGTCTGGGGTCTGGACTGGATTGTTCTGGTTTGGTTCAGGCCTGGCTTTCAGAATTAGTGAATCTGTGAATTAGTTAGTTAACAAGATGATTGCTGCGGCGTCCTGACCATGCTCAGGTGTATTAGTGCTGCTGTGTGCAGTGTCACACCCCACAGACACTCAGGGACTCCAGGGCAGTTCTGTCCTGTTTTTACTGTCAGCCCTGGCCCTTGTGAGCTACAGTACAATATCCGTTGGACTGAGGGGAGTAGGGTTGGACTTTTCTGTGTTAGACAAGCTGTACATTTTTATGTCTGAACATGGCCAAAGCCATTCAGTACACAGCAATCCactatttaataaaattaatgaatgaatacatcttTATGTATGCACTTGTACAGCTGCAGGGTTTAGACGGTCCGGATCAGTCTGCCCTTCGGGCTGCCTCCCCAGATCTCTCAGTGCAGCGCTGCCAAAATGAGTCAGTGTTGAACTtgtgcagcagctgcagggtTGTGGTTGCAGGAGGGTGCGTAGTGTGAAGTAAAGCTTGTGTTCGTTCTGACCAGTGCACTCCGAGGCACCCACACTGGGCTGTAAGCGGTTTCTGTGTTTGCAGTACTGCCCAGCCGCCACTTAAGGGTGCTTGTCTCTGTTTCCCAGCTCTGATTCTCTCCTGTCTGCAGAATGGCCTCAAGTTGTGAACTAACCTCAGTGTGTGTGActtatatttatctttttataaaCTGTCTGGAGGGGTAGAAAGATGGAGGGATGTGGTGGAAGGAGGGGATGGGAGACGCAGATGTAAACCaac

Function

GO:

id name namespace
GO:0002521 leukocyte differentiation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005524 ATP binding molecular_function
GO:0004017 adenylate kinase activity molecular_function

KEGG:

id description
K00939 adk, AK; adenylate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 158172 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 198398 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 260889 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 261612 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 429006 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 99238 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 117351 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 130829 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 179169 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 216728 12076728 ~ 12144122 (-) True G104568
AMCG00011118 mRNA downstream 1334 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011119 mRNA downstream 49474 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011113 mRNA downstream 87289 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011114 mRNA downstream 160901 11665124 ~ 11694330 (-) True AMCG00011114
AMCG00011112 mRNA downstream 193932 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011124 mRNA upstream 12604 11872604 ~ 11891098 (-) True AMCG00011124
AMCG00011130 mRNA upstream 31687 11891687 ~ 11899248 (-) True AMCG00011130
AMCG00011123 mRNA upstream 47461 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011126 mRNA upstream 58704 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011132 mRNA upstream 67100 11927100 ~ 11929873 (-) True AMCG00011132
TU130270 other downstream 2111446 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2252490 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2619038 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2991565 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 135413 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 207465 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 466097 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 575871 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 688289 12548289 ~ 12548993 (-) True G104715

Expression Profile