RNA id: AMCG00011122


Basic Information

Item Value
RNA id AMCG00011122
length 2031
RNA type mRNA
GC content 0.66
exon number 3
gene id AMCG00011122
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11943599 ~ 11946001 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGCCCCTAAGAGAAAGGTAGCTCGTCAGAAGAAGCTGACAGTGGAGCCGGGCAcggggggggaggagggggtggtggtGCTGGGGGGCAATGGCGACGAGAAGATCGAGGAGGCGGCGCTGGACATTGAGCAGCTGAACCAGCTGAACGGGCTGCTGCCAGACCCGGGCTTAGGGCTGGCGTCTGGGCTGGGCCGTGAGATGAGCCGTCCAGAGCACAGCGCTGCCATGCTGGAGGAGCTGAGCCGCATGCGGCAGGAGCGCTTCCTCACCGACCTGGAGCTGGCCACCAAGACCAAGAGCTTTGACGTGCACCGGCTGGTGGTGGCATCCTGCAGCCAGTACCTCCGCCAGCTGCTGGAGAAGGACCCGGAGCTGCGGCGGGTGGAGCTGCCGTCCCTCTCGCCCCTTGGCCTGGCCACTGTCATCACCTTCGCCTACCTGGGCCGCGCACACCTGTCACTGTACACCATCGGCTGCACAGTGGCGGCTGCCAAGCTCCTGCAGGTGCCGCAGCTGCTGCAGATGTGCGTGGACTTCCTGCTGCAGGAGCTGAGTCTGCCCACCTGCGTGTATGTGTGGAACATGGGCGGGGCCTACGGGCTGGCGGCTGTGCGCGAAGCAGCACGTTCCTTCCTGCTGCGGCATTTTGCAGAGTTCTCCCGCACCCCACCCTTCACCCAGCTCACCCTGGAGCAGATCTGCACCTTCCTGCAGGATGACCGGTTGCAGCTGCCCTCTGAGGTCACCGCCTTCCAGATCGCTCTCCGCTGGCTGGAATTCGACGAGCGGCGGACGCGCCATGCTGGGGAGCTGCTGGCCCTGGTGCGGCTGGAGACCATCCCAGCAGCTCAGCTGGTCAGTGAGGTGCAGGCCGAGCCGCGCATGATGCTGGACCCAGTCTGCCATCGCTTGCTGGTGGACGCCATGAACTACCACCTACTTCCACACCAGCAGAATGCACTACAGGGCCCTCGCACTCGTGTCCGCGCCGGCCGCAGTGTGCTGGCCGTGGTGGGGGGCCGGCCCTCGCTGACCGAGCGCGCACTGAGCCGGGAGGTCATGTGCTGTGAGGTGGGCAGAGTTGTGGAGGAAGGGGACCCGCCCCCGGCCTGGCGCGCCCTCACCCAGCTTCCTGCCAAGAGTTTCAACCAGAGTGTGGCGGCCATGGATGGCTTCCTGTACGTGGCTGGGGGGGAGGACCAGAACGACGCACGCAACCAGGCCAAGCACGCTGTCAACACTTTCTGCAGGTATGACCCTCGCTTCAACACCTGGCTGCACCTGGCTGGGATGAGTCAGCGCCGCACGCACTTCTGCCTGGCAGCCAGCGAAGGGCGTCTGTATGCTGTTGGGGGGCGCAGCGCAGACGGTGTGCTGTCCACAGTGGAGTGCTACATACCATCCGCCAACGCCTGGCAGCCACGTGCCACCATGCCTATATCCCGCTGCTGCCACGCAGCCACCACGCTGCCCTCGGGCTCCCTGCTGGTGACAGGCGGCTACAGCGGGGGGGCATACTCTAGATCTGTCCTCAGCTACAGCCCTGCTGCTGATGCCTGGGAAGACTGCCCCAGCCTGGCCACGCCCCGGGGCTGGCACTGTGCTGCCCTGCTGGGGGGGAGGGTGTACGTAGTAGGGGGCAGTCAGTTGGGATCCCGGGGGGAGCGGGTGGACGTGCTGGAAGTGGAGGTGTATTGTCCGGAGAGCGCGCAGTGGTCCCACGCCGCCCCCCTGTCCCTGGGGGTCAGCACGGCTGGCTTGGCTCCGCTGGGGGGGAGGTTGTTcctggtgggggggtggaatgAGGCTGAGAAGAAGTACCAGTCAGCCGTGCAGCGATACGACCCTGACAGTGACAGCTGGGGCACTGGGGGGCAGCTGCCTGAGCCCACCGTGGGCGTCTCCTGCTGCGCCCTCACCCTGCCCCCCCAGCCGCCACCCCCTGCACCGCATAAGACCGGAGAgcaagaggaggagagagatgtCGGGAACAACCAGGACAAGGCTGTGCCACTCAGGGAGGAGTAG

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130646 lncRNA upstream 11313 11930208 ~ 11932286 (+) True G104489
TU130645 lncRNA upstream 13585 11929213 ~ 11930014 (+) True G104488
TU130639 lncRNA upstream 22402 11919874 ~ 11921197 (+) True G104483
TU130634 lncRNA upstream 25452 11917688 ~ 11918147 (+) True G104480
TU130632 lncRNA upstream 26568 11914494 ~ 11917031 (+) True G104479
TU130628 lncRNA downstream 2239 11948240 ~ 11949712 (+) True G104477
TU130681 lncRNA downstream 31235 11977236 ~ 11978365 (+) True G104512
TU130734 lncRNA downstream 121450 12067451 ~ 12140465 (+) False AMCG00011141
TU130787 lncRNA downstream 205364 12151365 ~ 12151633 (+) True G104596
TU130798 lncRNA downstream 304258 12250259 ~ 12254820 (+) True G104603
AMCG00011116 mRNA upstream 104570 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011115 mRNA upstream 132777 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011110 mRNA upstream 294636 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 301372 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011108 mRNA upstream 356393 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011121 mRNA downstream 16397 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 40861 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 88296 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011134 mRNA downstream 99034 12045035 ~ 12050580 (+) True AMCG00011134
AMCG00011141 mRNA downstream 145318 12091319 ~ 12140338 (+) True AMCG00011141
TU130558 other upstream 99510 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 132903 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 272259 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1124176 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2410185 9530474 ~ 9533414 (+) False AMCG00011076
TU130727 other downstream 120493 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 579359 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 664128 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 996379 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2673689 14619690 ~ 14620534 (+) True G105139

Expression Profile