RNA id: AMCG00011123


Basic Information

Item Value
RNA id AMCG00011123
length 2187
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00011123
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11907461 ~ 11917021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTATAAAAGGCCATCACAAAGAGAGAAAGTGCTCATTTCGCCgccattttgttctttttggaGAGGTATTCTGGTCTGTTAGTGACGCATTTAATtgactttttaatatttgtttagcACTCACTTCTTGAGTTGTTTGACGGTGGCTACgcatttactgttttttgttttttccttttgagttaatcaaataaatacaataatgtccCGGGATCGGTTCAGAAATCGCGGCGGGTTCCAGCGCAGAGGCGGCAGTGGAGCAGTTCGGGGCGGAATGGGGGGAAACCCGAACTTCAGGAATCACAGCCAGCATCCCTTCCAGAACCGGCCTCCGCAGCCGCCGACATTAAACCAGGGCCCAGTGCCCAAACCAGGCCCACCTCCGAGCCCGATCACCAGCCCCCAGAAGCCATTGCCTCCCCACGCGAACCAGACACCGCCGCCAAATCAGCCCGTCCAGCCCGTCCAGCAGTCGCCTAATGCAAACAACAAGACTACTCCGACACCCCCGCCGCAGGCCCCGGTCAGCCAGCCTCGCCTGCAGTCCCCGCCGCCCAAGACCATCCCCCCGGCGGCCCAGAATCAACTACCAAACAAGAATCAACAGAAACCCGGCCAGGGCAACGAACACAAGCCGCCGGTGCCCCCGAACAACAAGCCTCCTCAGCAACTGCAACCGCCGAAGAAACAGGATGTTTCCTCCGAGCAGCCTCAGGAGCTGAAGGCCACCTTGTCCCTGCTGCGCAGACCAGGCGAGAAGACTTACACCCAGCGCTGCCGGCTCTTCATCGGCAACCTGCCCGGCGACATAAGCGATGACGAGTTCAAGAGGCTGTTTGCCAAGTATGGGGAGCCCAGCGAGATCTTCATCAACAAGAACAAGGGCTTTGGCTTCATCCGCCTGGAGTCACGGGCACTGGCAGAGATTGCCAAGGCTGAGCTGGATGATGTGCCGATGAAGGGGCGCCAGCTGCGCGTGCGTTTCGCCACTCACTCGGCTGCACTGTCTGTGCGCAACCTGTCTCCTTTCGTGTCCAATGagctgctggaggaggcctTCTCACAGTTCGGCCAGGTGGAGCGTGCCGTGGTGATCGTGGACGACCGCGGCCGCTCCACGGGCAAAGGCATTGTGGAGTTTGCCTCTAAGCCTGCTGCCCGCAAAGCCCTGGAGCGCTGCACTGAGGGCGTGTTCTTGCTCACAACGTCCCCACGCCCTGTGATTGTGGAGCCCCTAGAGCAGTTTGATGATGAGGATGGGCTGCCGGAGAAGCTGGCTCAGAAGAACCCCATGTATCAGAAGGAGAGGGAACAGCCCCCACGTTTTGCCCACCCTGGCTCCTTCGAGTTTGAGTACTCGCAGCGCTGGAAGTCCCTGGATGACATGGAGaagcagcagcggcagcaggTTGAGAAGAATATCCGTGAGGCGCGCGATAAgctggagggagagatggaggacGCCTACCATGAGCACCAGGCCAACCTGCTGCGACAGGATCTGCTGAGGCGCCAGGAGGAGCTGCGTCGAATGGAGGAGCTGCACAGCCAGGAGATGCAGAAACGCAAAGAGATGCAGCTCAGGCAGGAGGAGGAACGACGGCGCAGGGAGGAGGAGATGATGCGGCAGCGTGAGATGGAGGAGCAGATGCGCCGGCAGCGTGAGGAGTCCTACAGGATGGGCGGCTACATGGACAGTagggagagggagatgcgGCTAAGCGGTGGGGGCTCTATGGGCATGTCAGACATGCCCTTTGGTTCACCCAACCAGAAGTTCCCCATGGGAGGAATGGGCTTTGATGGCCACCAGGGCATGGGTGCACCTGCAGCTGGGGGCATGGGTGGTGCCATGATGCCTGCTGACATGCGCAATGAGCGTTTCCCACAGGGTGGCCCTGGGGGCCCCAGGGGCATGGGCCCCGGTGGCATGGGCCCTGGTAACCCTGGCTTCGGCCGTGGGCGTGAGGAGTTCGATGGGCCAGCCAAGAAGCCCAGATTCTAATGCCCCTTACCGACCGCTGGAGACTTGAGAAACCAGCGCTTTGTGTAGATCCTGCTCCCAGCGCCCCACCTAGAGTCACAATGTTGTATTTGAGTTTAAAGTGTTCCTGCATTTTAGTGAGACTTTTTATGGcaaccttgattttttttttttttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13219 SFPQ, PSF; splicing factor, proline- and glutamine-rich

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 210402 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 250628 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 313119 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 313842 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 481236 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 42217 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 60330 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 73808 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 122148 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 159707 12076728 ~ 12144122 (-) True G104568
AMCG00011130 mRNA downstream 8213 11891687 ~ 11899248 (-) True AMCG00011130
AMCG00011124 mRNA downstream 16363 11872604 ~ 11891098 (-) True AMCG00011124
AMCG00011117 mRNA downstream 47461 11855231 ~ 11860000 (-) True AMCG00011117
AMCG00011118 mRNA downstream 53564 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011119 mRNA downstream 101704 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011126 mRNA upstream 1683 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011132 mRNA upstream 10079 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011127 mRNA upstream 13375 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011131 mRNA upstream 31219 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011128 mRNA upstream 35095 11952116 ~ 11958308 (-) True AMCG00011128
TU130270 other downstream 2163676 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2304720 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2671268 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3043795 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 78392 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 150444 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 409076 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 518850 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 631268 12548289 ~ 12548993 (-) True G104715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028269 False 2424 mRNA 0.49 10 NC_007130.7 40026041 ~ 40039906 (+)
rainbow trout (Oncorhynchus mykiss) TU2655431 True 2521 lncRNA 0.51 10 NC_050572.1 35425707 ~ 35436132 (+)