RNA id: AMCG00011124


Basic Information

Item Value
RNA id AMCG00011124
length 6884
RNA type mRNA
GC content 0.57
exon number 29
gene id AMCG00011124
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11872604 ~ 11891098 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTTTAAAGCGCTCGCGCACGGCGGCGCGGCTCAAGTTTTGATTTCGGTGTTTTGTAAGAGTCAGGGCCCTGGCGGAAATAGGACGCCCTGGCGCCCGCCTGATCGGAAAGCCACAGgcacaacacaatgcacagaTCCAGCACTACACAACACAAAGCGGGGAATAAACACGGCAGCACAAACAcgacacacataaatacacagacGCCCGGGCCTGAGCTGTAGCTTTCCTACCGGTACCAGGATCCGTCCGGACCCAGGCCAGAGCTAGAGACAGACGGCGCTGTGTACCAGATCCAGTTGTGCTGTTGTAAAGACCCCCCTATTTCTCTACCTCTCACTCCCATTCTGCACTTTCGCTGCCGGGGCCGGACGGTGCGCTGGGCGTAGGGGAGCGGGTGTGGACTGCTCTACGTCGGGCTGACGGATAtcactgttgctgttgttattagtattactgTGGCGGACAGTCCCGGAGAGAGCGCCAGCCGGGGACGGACAGGCGGCGTGCGCATCGTCAACATGGCGGAGAGCGAACAGGCGATGCATTGCGAGAGTGAAGAGAAGCCCATGGAGAAGTTGAGAGCATCAGCAGAGAGGGGCTCTGCAGTACTGATGGACATAGCTGAACCTGGTGGTGTTGAGGACATCGCTGACCACATTAGCCCAAGTAACAAGATTCCTGAGGTGGCTGGGACTGAGAGAGGCAcggaagaggaagagaagggagaccgagagagagagcgagagcagaTGGACACACAGAGACCAGAGCCTTGCTCAGCTCCCCCCTTGCTTGGTGGCCTGGATGGGGCAGGAGGGGTGGAGGATGAGGTGGAGGGTGCTCCTGTGATCGCGGCTGAGGatgacgaggaggaggaggtccTGCaggccccccccacctctcccagCCCATCACAGCCTGATAGACAGGCAGACGCAAAACCTGACAGCCTGGACACACAGCTTGAGAGCACGGACTCACAGAGCAGCACTGTGAGCACAGAATCAGTCAGTGTGGAGACAGAGCTCCCCCCAGCGGAGGTGGAGACAACTCCAGGAGGGGCGGAGCTGGCATGCGTGGCAGGGGCGCCCATGTTGGACAGGGAGAGGCTGCAGGAGAGGGAGCCTGTGGTGACCAGGCGGCCAGACAGTCAGTACAGGGAGCCAGTGTCCGTGCCACGTGAGGCGGAGACTGGGGACAGCGGGGCGTCCTTCCCGCCTGAGCTCCACATCAAGGACGAGCCGCTGGACGACGAGTACGATCGAGCATTGGCCCCGTCCCATGCACCGGCTCCGCCCCATGTACCGGTCACGAACAATACACTGACCACACCTCACTCACAGGCCCCACTCCATCCGTTACTGGACAAAGTCAAGGATGAACCTGACAACGCACagGAGTTCGGTGAGCAGCCCAAGACTGCAGAGGAACTGAAGATAAGCGCAGTGTTCTCTGTGGGAGGTCACACAGctggtgagagggagagggagggagCCTCTGCAGCCCCTCCCCAGTATCCCCCTGTGTCCAGACCGGTGCCAGGGGTAGGGGGGGCATTGGGGGCACCTGTCCGGCCCAGGCTTCTGGCAGTGCCTGCCAACACCCAGGCCCCTCCaccttcttcctcctcttccccctccTCGCTGCCCCCCCCGCCTGCTGCCTCGGCCTCCCCAGCAATCCGGGTGTCATGCTCCGGCTGTAAGAAGGTGCTGCAGAAAGGCCAGACGGCTTACCAGCGCAAGGGCTCCACGCAGCTGTTCTGCTCCACACTGTGTCTAACCGGCTACACAGTGCCAGCCGTGCGCACCGTGCTGAGGAAGACCTGCCACTACTGCCTCAAggagatTGGAAATCCCAAGGATGTGATCATAGCCCCTGTGGACACTGTGGGGACGGTGAAGGATTTCTGCAGCCagtcctgtctgtctgcttttGACTATAAGCGCAAGACCGCAGCATCTACTCTGTCCACCGAGGGCGTCACCATCAAGTGCAGCATGTGCCAGAGGACAGCCATAATCCGCCATGAGGTAAACTACCAGGGTGTGGTGCACAAGCTGTGCAGCGACTCCTGCTTCTCCCGCTTCCGCTCCGTCAACAACCTCACCATGAACTGCTGTGAGAACTGTGGGGGCTACTGCTACAGCGGGGGGGGGCAGTGCCATGTGCTGCAGATCGAGGGCACCGCCAAGAAGTTCTGCAGCCCCACCTGCATCACGGCATACAAGCTGaagaGTGCAAAGGTGACGCCCTGCACAGTGTGTCAGTCGCTGCGCTCCTCGGCCGAGATGTTAGAGAATACCAGCCCCCAGGGCCGCACCGAGCTCTTCTGCTCCGTCAACTGCCTGTCTGCCTACAGGGTTCAGAACTTCACTACATCAGGTGTGCCGGTGCCCTGTAACAGCTGCAAGGCGTCCGCTGTGCCGCAGTACCACCTGGCCATGTCTGACGGCAGCATCCGCAACTTCTGCAGCTACAACTGTGTGGTCAGCTTCCAGACTGTGTTTAATAAGCCCTCCTCTCAGCCCGCCCCAGTGCCTCTCTCTCAGAGCCAGGTGATAACCAGCACCACCTCCTCCGTCCCCGGGGGGGCCGCTGTCAACCTGgccacccctgccccccctaGCACTGCCCCCCCAGCCCCGGTGCAGCCAGCCGAGCCCCCCCGTGCCCCTGCCCCAGCCCCGGTTgcacccccctccacccccaacCGCTGTGTGGTGAAGCTGCGCTGTCGGCACTGCAGAAACCTCTTCACATCCAAACCAGAGCTTCTGGAGTTCAAGGGACGCATGGTGCAGTTCTGTGGCTCGGCCTGTGTGGAGGAGTTTAGGAAGGTGAGCTTCGTGTCGGCGCGCTGCGAGTATTGCAAGATCGAGAAGCATGACTTGGCCAAGCGTTGGGGCAGCCTGTGCCGGAGCTGTGCGTACTGCAGCAACGCAGGGCAGAAGGCTGTCCAGAATCACTTTGCGGGCCGACTGGAGGAGTTCTGCAGCGAGGAGTGCATGTCCCTCTACACTGTGCTCTTCTACCAGatggcGAAGTGTGACTGGTGTAAGCGCCAGGGGAAGCTGCTGGAGTCAGTGAAGTGGCATGGAGAGATGAAGCACTTCTGTAACCTGAGCTGTCTGCTGCAGTACTGTGGCCAGCAGATCTCCACAGAGACGCTCAGCAGCACTGTGAATGCCATGACTACAATGCCTGCTGTGGCCCCCACCCTGGCAGCACCCCCCTGTGCCCCTGTGGCTGCTCCAGtgattccctccctctcccccgtCACCCAGAAGAAGGAGCCGACGCCCGTCATTGCCAACGTGGTCTCCCTTGCCAGCGCTCCCGCCGGGCAACCCGCCCTGCACGCTAGCACTGCGCTGCAGGGTGCTGTCCCCACTGCCCAGGCCAAGATCATTGGAGATGCCAGTACACAGACGGACGCCCTGAAGTTGCCCCCTGTGGCGCCCCCCCGGATCCTGAAGAACAAGGCCCTGCTGTGCAAACCCATCAGCCTGACCAAGGCCACATCCTGCAAGCCCCACACCCAGAGCAAGGAGAGCCAGACTGAGGAGGAGTGGCGTCCGGATGTGTTGGTGATCCCGGTCCCTGTGCCTGTGTTCATTCCTGTGCCGATGCACCTGTACACCCAGTACACCCCCTACCCCCTGGGCCTGCCCCTGCCGGTGCCTGTGCCCCTGTTCCTGCCCACCTCTCTGGACAAGGCAGAGCAGGCACTGGGGGCAGTACAGGACCTGGCGCAGGACTTACCCTCTGACCCATACGAGGCCGATCTCCTGCACATGGCAGAGCTGATCGCAGAGGAGCAGGAGAAGGACAAGCCCGTCTCCCATGGAgACCAGGGCAGCACGTACAGCGGAGACCTGGAGAGCGAGGCGGTGTCCACTCCACATAGCTGGGAGGATGATGTCAATCACTGTCCACTGCGCTCTGGCCATGCCCCTGAGCCCGACCCCCCCACGACCCCTGGCCTCcagccccccccctccccctcgcTGCTGCAGGACCTGGAGGCTGATTTCCCCATTGCTGATGCTGTGCTGTCGTTGGCAGAGTCGTTCGACCCAGCGGCGCGGGAGACTGGCGGCCGGAAGAGGGCAGGGGCGGTGGTGTCTGCTGGTCTGTCTCGCAGTGCGCAGCCCCCTGGTGCTGAAGCCAGGCATGCACTCAAGCACATGTATGGTGTGAATGCCTGGCGCAGCTGGGTGCAGTGGAGGAATGCCCAGCCCGACACTGAGCAGCCACGATTCGGCAGTCGTCCGATGAGCCCAAAGGAGGACGTGCTGGCCTGCAGCTCCGCAGAGCTCAGCTATGGCCTGTGTCGCTTCATCAGGGAGCTGCGCCGGCCAAACGGGGAGCACTACACCCCCGACAGCATCTTCTACCTGTGCCTGGGCATCCAGCAGCACCTGTTTGAGAACGGCCGCATCGAGAACATCTTCACTGATCTGGGTGCGTACTCCCCCATTGTGCTGCTCAATACGCTGCTGTTCTTCAACACTAAGCTCTTCCAACTGAAGACCATCCCACAGCACCTGCGGCTCTCCTTCGCCCACGTCATGCGCTGCACCCGCACTGCCCCCGCCAACACGCCCGGCAACACACCTGGCATCGCCAAGACCACTTGCCTGCGCTTCTTCCCCCCTGCTGCTAAGAGGGAGCCTGCAGaaaaaGGTGCTGCCCTGGGGAAGCGGAGGCTGGAGGAGGGGCTGGAGGAGGAAGTGATGGAAATGCCCGAGAACACGGACAACCCCCTGCGCTGCCCAGTGCGGCTCTACGAGTTCTACCTCTCCAAATGtTCAGACTCTGTGAAGCAACGCACAGACGTGTTCTACCTGCAGCCGGAGCGCTCCTGCGTGCCCAACAGCCCACTGTGGTATTCCGGCCTGCCTCTCGACCCCGCCACCCTGGAGACCATGCTGACGCGCATCCTCATGGTGCGCGAGGTGCACGAACAGCTGGAGAAGGCCCCCCCCCACGACGACGAGGCTGCAGGGTAGATCTAGAAGACGAGGCGAAAATAGAAGAGGGAtgcagcacacatacataaatatatatataaacacacactgtcTGGCCAACTGACTGAGCAGCATAATCCTCTTCCACTCCCAgtgtctcctctcccctccAACACCatcatttctctctccctctcaggcaGACCATGAGAGAGATGCAGAATGATTAGTACGGCTGGTTATAATGGCAGTACAGGACTGACGGGCAGTGCCTTGAGGAGAGAGTGGCCCAGTGCACTGtggtacagtactgtactgaaCACTGATCTGCCTAGTGACATGTACACTGTAGCAGGTGCTGAATGGTGGTACATTACGGTAGTAGCTTGATGCCtgggctgtactgtactgcacggTGTAGTACTTTGTAATAAAAGTGCAGTGtagtaaagtacagtatagtgtagtacagtcgAAGACAGGGCAGTGATCTCCATGATTTGGTCATGCAGTCCAGCAAACTGTCATGGCAGTACACTATTTTGGGATACAGTGAAGGACAGTGTGttctacagtactgtgtattATAGTACCATGCAGTGCCTAaaatagtgcagtacagtacattgtgCTGCAGTACAGTACTACAGTACTTAGTGTCTCAGTGCGGGACAGGCACCCCAGCTGCTTGCCCCTGGAACATTTCATGTTGGATTGTGCCTCAGCAACAGCTGTGACTTtcttaacaaaatgaaaataaaaaaatatgtaaataatgtaaagaagAGGGGGGGGCGGGTACTGGTTCTGAAAACCTGTTTGTGAGGATTCCCTTTGAACAGCTGGGCTGCGCAGATGACTGCAcactcatttcattttaaaacattgtctggtttagtttgatttaaaaaaatgtttaaaggagAAGCACGGTTAACTGTGCGTGCATGAACGTGCGTGTAGGAGAGAGTTAACACAGATTTTCAATGTTGTAAAGAAGATGAGctccagtacagcagggtctccagccctggtctcCTGGGAGCTGCAGTATTTATTACAAGAAAGAGAACTGGTTGGCAATCAGTCTGGCTGAACAGAcctcatttttaaatgcaatgtttagAAGTTAACAGCCACTTTTTTGGCAGAACTATTTTATAACAAAGAACCAAGTAAACACTAAGGACTGCATCTGACAAagcctaatgtttatttaaatgtttatttttttattttcaaagattcTTTTGCatcatacagtacagtatagcacaGGCCCTGGACTGTGCAGCTTCAGCCATGGCAGGGATTGTGGTGGTGCTGAGAACTGGGTTACTGGGGGAGAAATGAGCTGGGAAGGGTCACAGTGTGCCAGTGCCAGAGTGTCTCAGTCTGTCTCTGGCTGTCCTTCCCTCCTGTCATGATCAATCATAATATAGATTTTATGCCATCTctagttttttaaattacttttcttgAGTTTGATTCTGATCTCTTCTGATATAAAAGGAGtgtataatttttaattgtatgtctTATTGGTCTAtgtggagggaggggagggttTGACAACGGATAAAGTGAAAAGTGAGTGCACACACAGTCCGCAGAGACAGTGGTCAGTAAGGGGCCAGTGTTCTTGttgagtgaatgagtgagtgagtgaatgaatgTGTGAGAGGTGACTGGCGCCCACCCACTGAACATGAATGTAGCTGTCCAGTGCAAGGTGCtatatagtttttgtttgtttttttgtattttttgtttgtggtgTTGGAGTGGCATAGTGGAGCTCAGCCCAGAGGAGGATGGCTTCGTTTTGAGCTgctggagggtgggggggggcagttgtttttgtaatgatttttttttaatataaaaccaaTATTAAAAGAA

Function

GO: NA

KEGG:

id description
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 175545 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 215771 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 278262 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 278985 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 446379 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 68140 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 86253 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 99731 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 148071 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 185630 12076728 ~ 12144122 (-) True G104568
AMCG00011117 mRNA downstream 12604 11855231 ~ 11860000 (-) True AMCG00011117
AMCG00011118 mRNA downstream 18707 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011119 mRNA downstream 66847 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011113 mRNA downstream 104662 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011114 mRNA downstream 178274 11665124 ~ 11694330 (-) True AMCG00011114
AMCG00011130 mRNA upstream 589 11891687 ~ 11899248 (-) True AMCG00011130
AMCG00011123 mRNA upstream 16363 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011126 mRNA upstream 27606 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011132 mRNA upstream 36002 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011127 mRNA upstream 39298 11930396 ~ 11937533 (-) True AMCG00011127
TU130270 other downstream 2128819 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2269863 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2636411 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3008938 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 104315 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 176367 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 434999 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 544773 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 657191 12548289 ~ 12548993 (-) True G104715

Expression Profile