RNA id: AMCG00011125


Basic Information

Item Value
RNA id AMCG00011125
length 1233
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00011125
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11959238 ~ 11971002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgggaaaagaaaagatcCACATTAACATCGTGGTCATCGGCCACGTCGACTCCGGCAAGTCCACCACCACCGGCCATCTCATCTACAAATGCGGCGGCATCGACAAGAGGACCATCGAGAAGTTCGAGAAGGAGGCGGCCGAGGTGAGTCTCAGCCCGGCGGACTCCGCTCCTCTCCTCTCGCTCGCCTCCTCCATTGCGAGGCGGTGCGGTGTGACTCACGGCTGTAAAGATGGCGGCCGAGGCATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGGACAAACTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATCTCCCTGTGGAAGTTCGAGACTGCGAAGTACTACGTCACCATCATTGATGCTCCTGGCCACAGAGACTTCATCAAGAACATGATCACTGGCACCTCACAGGctgactgtgctgtgctgattGTGGCTGGAGGCGTGGGTGAGTTTGAGGCTGGCATCTCCAAAAACGGCCAGACCCGAGAGCACGCCCTGCTGGCCTTCACCCTGGGAGTGAAGCAGCTCATCGTGGGAGTCAACAAGATGGACTCCACCGAGCCCCCCTACAGCCAGAAGCGTTACGAGGAGATCACCAAGGAAGTCAGCGCCTACATCAAGAAGATCGGCTACAACCCTGCCACCGTGGCCTTCGTGCCCATCTCTGGATGGCATGGAGACAACATGCTGGAGCCCAGCACCAATATGCCTTGGTTCAAGGGATGGAAGGTGGAGCGCAAGGAGGGCAATGCCAATGGCACCACCCTCCTGGAGGCTCTGGACTCCATCATCCCCCCCTCCCGCCCCACAGACAAGCCCCTGCGTCTGCCCCTGCAGGATGTCTACAAGATCGGAGGTATTGGCACAGTACCCGTGGGCCGTGTTGAAACTGGCACCCTGAAGGCCGGTATGGTGGTGACCTTTGCCCCCGCCAACGTGACCACTGAGGTGAAGTCTGTAGAGATGCACCACGAGACCCTGGTCGAAGCTGTTCCTGGGGACAACGTCGGCTTCAACGTCAAGAACGTGTCAGTCAAGGACATCCGCCGTGGCAACGTGGCTGGAGACAGCAAGAACGACCCCCCAATGGAGGCTGGCACCTTCACTGCCCAGGTGAGCAACTGGATGAGCAGGACCGGACTGGGGTGTCAAGCTTCAGATGGTGCAGTCCTGGATCTCCCTTGGTCTGACCTTCACTTTCACTGCCTTTTGTGA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 270310 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 310536 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 373027 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 373750 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 541144 11420749 ~ 11426225 (-) True G104319
TU130682 lncRNA upstream 7116 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 20594 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 68934 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 106493 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 165733 12135968 ~ 12142015 (-) True G104591
AMCG00011128 mRNA downstream 9061 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011131 mRNA downstream 16369 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011127 mRNA downstream 29836 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011132 mRNA downstream 37496 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011126 mRNA downstream 42910 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011129 mRNA upstream 8718 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011140 mRNA upstream 22004 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011138 mRNA upstream 33861 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011137 mRNA upstream 44918 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011139 mRNA upstream 83403 12053638 ~ 12059625 (-) True AMCG00011139
TU130270 other downstream 2223584 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2364628 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2731176 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3103703 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 25178 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 97230 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 355862 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 465636 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 578054 12548289 ~ 12548993 (-) True G104715

Expression Profile