RNA id: TU130673


Basic Information

Item Value
RNA id TU130673
length 2502
lncRNA type sense_over
GC content 0.49
exon number 4
gene id AMCG00011125
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11959238 ~ 11971002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggggtgtCGCTCCCAGTATAAAACCCCCGACCCGCAGCCCTTGCTCCTTCTCTTTCCGTTACCTGGCCACGGGGTAGTAGCAGCAGCCGAACGGACTCCTCACCCGaaaCTTAACGCAACAACcatgggaaaagaaaagatcCACATTAACATCGTGGTCATCGGCCACGTCGACTCCGGCAAGTCCACCACCACCGGCCATCTCATCTACAAATGCGGCGGCATCGACAAGAGGACCATCGAGAAGTTCGAGAAGGAGGCGGCCGAGATGGCCGGTGGTGGTGGACTTGCCGGAGTCGACGTGGCCGATGACCACGATGTTAATGTGGATCTTTTCCTTCCCCATTGCGCTTAGTTATAGtttctaattcaattaaaaataaacgacgctacagtgaaaacatgtatatataatttacacacagaaaatgtgccaaacagcctttttttattattccagtATAAAATACAGCTTACGCACTAAAAGCGTACCCTTAAACCGCgctcccccctctccccagtCCTCCATGTTGAGCCGGCTCCAGTCCCCAGCCTTCCTCCATGTTGTTAGCCAGCCCCATTGATCATACAGTGCTGACTCAGCGCCAACCGCATGGCCACGGCCCAGAAGCGGCCTCCCCTCGCCGCCGCAGTCCCCGCACCCCCCCGCTCAGCAGCGTCGCTGGCCGGCTGCGGGGGCTACATTAGCCCAGGAGTCTGCGCACTGGCAGCAGCGCAGACAATAGGTAGTACCGAAGCACCCCCCTCCGCCATTGCTGGGCCCGAGCTTCCGATTACATTATCCCCAACATCTGCAACCGACACTAACCCAAACTGGGCTCTCCAACCCGCCCCGCCGGTCCCGCGGAGCCGAGCTCGTTACCGGGGAGCGGCTTGGGTTCGATGACCCGGATGGGTTCGGATTGTGTGCACCGGTGAGCAGACTGGGAAGGGCGGGGGGCGAGCGctaggttttttttatttaaaaaataaaaaaaataaacccttaTCAATAGCGGACAAAGTACGCAAGGACACCCTACCCATACAATTCGGGGGAAATCAAATTTGACATCCTATCTCCGTGATACGGAGCCTCGGCCCCCGGCGTCAGTGCCGCTTCAGGAAACGGTTTAGTCAAGTCTCGAGTAAGGCCCCAGCCTGCTAGTGGTTTCCTCAAAATGGCTCCTTGCAGAAAAATGGGAACACTGAAATGTACATAGTGTGGGCTGCCAGTGAGTGAGCCACCTGACTCCCCAGCTCTGCAGACGAACTAAAGGATCtacattacatacaaaataaattcaaaccCGCACGCTTTTATAAAAAGCCCATACCTGCAGTTTGCGGTAGTGCACAGCGACTGTCCCTGGGTCAGAGCCGGAGATAAAAAGGACCGAATCCGGCCCCGCACCGCATTTTATACCGGCACCGTAAGGGGCGTGGTTACATGTCAGTTAGAGCAAGGCGGGCTGACTAGGAACCAACACCGATCTCCATTGGCTGCAGCGGGACAGACCAATCGCTCTCATTGGTCGCACAGATACAGTGGATTCTCAACGCCAGACGTCAGGCTGCGGCAGCCCAGCAGtcagaaaaatgacaaacacGTGGTTGACAAAAAGGTTAGCGTGGAGGGGAGATTTTAACCCTGAAATCCTGCCATGTAGACATGGTCTGTGATCTGGGAGTCTACATCTAAAACAGAGCAGCCCAACCCCTACAACGGAGGGAAGAAATTGAGAATCCACActgcaattacaaaaaaattcCAACAGCCCCACCCAATTCCTAAGCATCTAAAAATCACACTGGGACCGGCTGACTAACATCTTTTGTAACAAAACACCTTCAGGTAAGAAAAGAGCCAGCACTGGATTGATGGGTCAAGAAATTCAAAGACCTTTATTTGATTACAGCAGCTTCATCCAATCCAATAAAGTGGCCCCACAATTAGTTGCAGCTTTAGAAACCATTAACTGAAATTAACCAAAACTGAAAGGCACCGCAACTTTAACATTTCTGTGAAGCCACATAAATACCGATAACGTGGGTTAGGTTTTTGTTCCTTTCCTGCGAAAACTTTTGCGATGGGTTTTAATGAGCATTAGCCAGTCCTTAAGGACTGGCTAATGCTCATTAAAACCCATCGCAAAAGTTTTCGCAGGAAAAGAAAGTTCAGAGATAGTGAAATTTTaggctaaattaaaataattaaatatctatatcaaaaacaaaacaaagtgccaTTGCGTTCCATAATTGCCAACACTGAAAGGGGGACAAAGAAATAATAACGAGAAATTGAGAAACTGATTGTGGGGCTGCTGTTtgggtgttcttttcttttttttcttttttttttttaacaagaacttggaaattaataaacaatgagCACACTTCCtgacttgtgtttttattttaattacgaGTGTTTCTGGGTTTTGGGTAGGGTTGTTCAGAAGCTGTATTGGAAAGCTGGTTTTCAAATGGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 262179 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 302405 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 364896 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 365619 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 533013 11420749 ~ 11426225 (-) True G104319
TU130682 lncRNA upstream 6349 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 19827 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 68167 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 105726 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 164966 12135968 ~ 12142015 (-) True G104591
AMCG00011128 mRNA downstream 930 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011131 mRNA downstream 8238 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011127 mRNA downstream 21705 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011132 mRNA downstream 29365 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011126 mRNA downstream 34779 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011129 mRNA upstream 7951 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011140 mRNA upstream 21237 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011138 mRNA upstream 33094 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011137 mRNA upstream 44151 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011139 mRNA upstream 82636 12053638 ~ 12059625 (-) True AMCG00011139
TU130270 other downstream 2215453 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2356497 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2723045 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3095572 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 24411 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 96463 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 355095 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 464869 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 577287 12548289 ~ 12548993 (-) True G104715

Expression Profile