RNA id: AMCG00011126


Basic Information

Item Value
RNA id AMCG00011126
length 1758
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00011126
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11918704 ~ 11924459 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTAGAGTCTACGGCACCGAGCCCGGCCCGGGAACCCGACATAGCGGACCGGCCCGGCGGGACCCAACCGGACCGGAGCTCATACCGGCTGCGTTGGGCCAGCTGGGGAGCGCCCCCTCCAGTGTATGTGTGGTAACAACATGTCTGTGCCGCTGCTTGCTGAGGCCGTGACGGTGTctgggacagagagggagaccgCTGCGGTAATTTTCCTCCATGGGCTGGGAGATTCAGGgcatggTTGGGCAGATGCTATGTCCTCCATCAGGCTGCCTTATGTGAAGTACATCTGTCCCCACgcGTTTGACCTGATGGGTTTGAGCCCCGAGTCTCCGGAGGACGAGGCTGGAATCAAGAGGGCAGCAGAGAACATTAAAGCCATCATTGACCATGAGGTGAAGAATGGGATCCCCTCTCACAGAGTGCTGCTCGGGGGGTTCTCTCAGGgtggtgctctctctctctacactgcTCTCACCAGTCAACACAGGCTGGCTGGAGTCGTGGCGCTGAGCTGTTGGCTGCCTCTGCACAGGAGCTTCCCCCAGGCGGCCAGTGGCAATGCCAACCAGGACATGGCGGTGCTGCAGTGCCACGGGGAGATGGACCCCATGATCCCGGTCCAGATCGGGGAGATGACTGCAGAGAAGCTGCGCACCCTGCTGCCCCCACACAAGGTTACCTTCTCCACCTTCCCTGGACTGATGCACAGCTCTTGCCCACAGGAGATGTCTGCAGTGAAGGACTTCATTGAGAAGCAGTTGCCCCGAATCTGACCTCTACTGTGACCCCTCACCTCTCACCTCTGACCTCCAACCCACCACTCCCTGACAGGAAACAGCCATGGACACCCCAATactcacacactgtaacactggTTCCCTCtacttttttcctctccttctctcccttcctctctgtccctcagtgTGCTTGTTCTGAGTTCTGCCCCCTGGTGCAAGAGGCTGTAGTGTTGGGGTGTGTACAGCAGGGGGCACCCAGTCTCACTCACACAGCAGTGCTCCCCCTGGAGCTGCAGAGCAACACACTGTAACTgagccccccccacacacacacacgcaccgcAGACACCAGTCACCACCTCTCCCTGCCCctccctttctccttctctctgtgcgtctctaaGAGGGTGCTGCTGTCAGTGTGGCCAACAGGCTCTGGGCTCTTGATTGTGGTGCGGTCTGGGTTagccctcctcctccctcacagctcctcttcctccccagTTCTGGTTCTGTTCTGTCTTCCCGCTCTCGTCTGTCAGCGTTTCCTCAtcttctgatttttattttttattttatgttttggtgtgtttatttttagggTCCCTGTGAAAGTTTTAATCTCTGTGTGgacggactgactgactgactatcTATCTGACtgattgatacactgactgacttattgatacacagatacactgactgacagagacactgagacgtAGCTGATGAGGTGAGtgagcagacagacagacagacagacagacggacaggtGGTTATGTAGCTGCAAGGACATAGAGACAGGCAGTCAAACAGTATAACAGACAGATAGCTGAGAGGACCGAAAAGAGACGGACAGTTTGTTGGGGTCGAACAGGCAGgtagagagaaacagacaggaagtcagttaggtctgtttttttttgtttgttgttgttatttgtttgttattgatttggctgtttgtgaaataaataaattgatgaaTCAATAAACAACTTAGACAACAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06130 LYPLA2; lysophospholipase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 221645 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 261871 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 324362 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 325085 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 492479 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 34779 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 52892 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 66370 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 114710 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 152269 12076728 ~ 12144122 (-) True G104568
AMCG00011123 mRNA downstream 1683 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011130 mRNA downstream 19456 11891687 ~ 11899248 (-) True AMCG00011130
AMCG00011124 mRNA downstream 27606 11872604 ~ 11891098 (-) True AMCG00011124
AMCG00011117 mRNA downstream 58704 11855231 ~ 11860000 (-) True AMCG00011117
AMCG00011118 mRNA downstream 64807 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011132 mRNA upstream 2641 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011127 mRNA upstream 5937 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011131 mRNA upstream 23781 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011128 mRNA upstream 27657 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011125 mRNA upstream 42910 11967369 ~ 11970235 (-) False AMCG00011125
TU130270 other downstream 2174919 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2315963 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2682511 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3055038 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 70954 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 143006 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 401638 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 511412 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 623830 12548289 ~ 12548993 (-) True G104715

Expression Profile