RNA id: AMCG00011127


Basic Information

Item Value
RNA id AMCG00011127
length 3461
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00011127
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11930396 ~ 11937533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcagcaggaggaggaagaggaggaggaggaggaggaggaggaggtggggtacCCTAGCAGTTACGCCCCCTCGCCACCAGAGCGCCACTACAGCCCCCCCCACAGCCAAGGTGGCCTCGGGGGGTACCAGTCAGAGGGGTATGAGAGCCCACCTGAGGAGGagcccccccccagccccccccgcAAAGAGATCAAACATTCTTCACAGACGGTCAGGCCACACAAGGACCCGACGCGGGAACGGGGCTCTCACGGCGACAGGGAGCATCGTCACGGCGACAGACTCCAGGGCAGCAGCGGGGGCAAGAAGCGCAGTAAAGACACTGAGCCACAGGGCAGCGCCAGAGAGGACAAGCCCCCCAAACACAGCCGGCAGCACCCCGCTCCCCCACGCGGGGCAGACAAGGAGGGCAAGAGCGACCGCAGGGCGGGGGCAGAGGgaaaGACAAGGGACCACAGGGGGGCTCAGCACAGGCCCAGGCAGTCCTCTCGGGGGCGAGGGGGTGAGgacgaggaggaagaggggggggcAGGGCAGAGAGTGGTGGAGGAAGAGCAGTTTGAGACCCCCACCATGTCCTTCGAGTCCTTCCTAACCTACGACGCGCCACCCCctgggaagaagaagaagaaacagcaGCACCAGGCGGCCCCTGCCTACTCCTCCACTCGCCCCCCAACTTCTGCCGGCGCTACCCCAAGCAAAGCCAATGGGACCCAAGGGAAACGCCCCAGACAGACCCCCCCTGCCCCAGGCTCCTCAGCCTCCACCCCTGCCACCCCCACAACACCCCCCACCCGTGAGAAACGCAGGAAGGTGGTAGACACAGTGCCTGCGCTTCCTGATATTCCTCTGCCAGTGATCCAGCCCCACTACCGCCCACTACCCTCGCTTGACCTCACCCCGCTGTCACCCCAGAGGCGCAAGGTTCCTCAGTCATGTGACGAAGAGGATACTGGCTTCACTGGGCGGCGCTTCAATTCCAAGATGGCGGTGTACTCCGGCACCAAGACAGCCTGCCTGCCCAAGATGATGAGCCTTTACGAGCAGTGCATCCGCGTGCTACAGAACAACATCGACTCGATCGatgaggtggggggggtgccCTATGAGATCCtggagccggtgctggagcgATGCACCCCCGAGCAGCTGTACCGCATAGAGCAGTGCAACCAGtACTTCACGGAGGACTCAGACGAGCTTTGGATGCGTCACTGCCAGAGGGACTTCCGGCGGCAGTGCCCGGAGGAGTACGAGTCCTGGCGTGAGCTGTACCTGCGCCTGCACGACGAGCGGCGGCAGGTGAAAATGGCATTTGTGAACTCTGCTGTAAAGCCCCCCCGCGATGTACGCCGACGGCAAGAGAGATTCGGCACCGCCTCCTCCAGCTCCGCCCCCCCAGCCGCTGCTCCCGCACGtATTCGTCCTGCCCAGATGTACAGCTCCTCCCACGTTGATTCAATCCCCAGCTCATCCCACAGCAGCCCCCCTGAGGCTCCGCGCTCCTCCTCTGGGGGTGGGCAGTCTGCAGGGGGCGGCACCAGCAACAAGCCCCAGGTTAAAAagaTTGCCCCAATGATGGCCAAGACTATCAAAGCTTTCAAGAACAGATTTTCCAGACGgtagatggagagatggagaacTGGAGCGAAAGGAGAGAAAGAAGTGAGATTGTAGCCCCTCCCCCTCATCCTgcaccctgcccccccccccagggagagaggggtgggggtggtttGGCTGAGAGACTAAGAGACAGCAGcccctaaacacacacacacacacacacaccctcttaGGCCCTCTCACGCCCTCTCACACCCTCTCACATGCACAGACAAGCTTAACCCTCAGAGGACTGAGACAATTTATACTTGTTTGTACCACTTTTACATTctagctgataaacaatatgtatctatttttcaGAACAACCTCTGCTAAATGCATTCttcatgtataatgtacttataagaTAGTATTTGAGTgaacaatgtgcaataaagttAAATGAGAAAtggaatttctttttttttttttattattattgactgcACACCCCACACAGTAATAGTGAACAgttttgacacttagaacatgctcttcaaagccttaggtattgaaatatacattgtctttcaataaactatatacataacactgaaataatgcaccttttttGCAAACTGCCCCAGGCAAACAGTGAAATTCTGTTTTCCCTGAATTATTCAGATCCCTCAGACATGTcactgagcaaagctgggcatctccaggaagtggcagaggggcacctggcatgccagggggtcttgttatatattctgctgacctTACAATCTGgatcagcttctgttttcctttgctggaaaataaaaatctagttctgtttctttttttactttattgcacattttccacttatataatatatactgtattataagtacataatacatgcttagctgaagctgttctgaatccatagatatCTCATATATAGCAGTAGCATCTAGAATAGCTGAGTTATGAGCTGAATTGTATAagcctctccctctcactctgcTGGCTCTCCCACCTCTCTGTCACTGCTCGGTCTGGACACTTGTCAGCTGATCTATTCCAGCTGCCTGAGACAGGTTTTTTTGATTGGCTAGTAAAGGCAGATCTCCATGGGACATGACACACAgtaacatcctctccattgggcaATTCCAGACCCATGTGCTGCATTGTGCATTGAATTTCTAGAACCAGGAAGTATGCGACGTACACAAACCGCACATGGTatttttcagcagaatctcagctatgcagctaaaaaaacatttctcagataattaatactttgtaattgatgcccgAATTTAGGGTGGATCCTCTTAAATCGTCCTCAGAGGGTTAAACAAGAAATAGTTGTACACTGCAGACACACTGTCCACTGTTCACTACACACTGCAGgtaggcagacagacagacagacagacagaccgatAGATGGACAGGCACTTGATCTGATCTGTAAACTTTGCTGTTCATTATGCTGGATGGAGGCTTTCCAGGATCAGGGCTGTTCCTCTTCACTATCATACTATgtactcaacacacacacacacacacacacacacacacacacacacattgaggCAGAAGCAGACAGTCCTATGTAGACACACACAGTTgcagtaatacacacacacacacacacacacacaatagacctcccccccacctcccttcCCCTACTTCTCTTGCTGTGTGCTGAGTCACTGTACTGACAGGAAAGGGAACAAACCTGGGATCTCTTGGTGCTggtgggaagagagagagggtgagaatGAGAGTGTATGAGATGAGAGTGTATGAgacagagagtgtgtgagaaTGAGAGTGTGTGAACAGAGGTggtggggctggggggctggggaAGGAACGGGAGGGGAATgggaagggagagg

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 233337 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 273563 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 336054 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 336777 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 504171 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 21705 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 39818 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 53296 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 101636 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 139195 12076728 ~ 12144122 (-) True G104568
AMCG00011132 mRNA downstream 523 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011126 mRNA downstream 5937 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011123 mRNA downstream 13375 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011130 mRNA downstream 31148 11891687 ~ 11899248 (-) True AMCG00011130
AMCG00011124 mRNA downstream 39298 11872604 ~ 11891098 (-) True AMCG00011124
AMCG00011131 mRNA upstream 10707 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011128 mRNA upstream 14583 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011125 mRNA upstream 29836 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011129 mRNA upstream 41420 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011140 mRNA upstream 54706 11992239 ~ 11995934 (-) False AMCG00011140
TU130270 other downstream 2186611 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2327655 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2694203 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3066730 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 57880 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 129932 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 388564 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 498338 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 610756 12548289 ~ 12548993 (-) True G104715

Expression Profile