RNA id: AMCG00011128


Basic Information

Item Value
RNA id AMCG00011128
length 1733
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00011128
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11952116 ~ 11958308 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaTGAAAATTTGCTCATAGCTCAGTTCTGGGAACagacatgcaaacaaacatcaaCTGATTAAGTCACCACAACTGTTTGGCGCTTTCCCTGACTGGGCTGGAGAGAGAAAGGCGGTTCGACACACAGATAGAGAGAATGTCAGCACCCAGGAAAATGGAGTCCCCACGGGGCAGGCAGCGTAGGATGACGCAGCCCAGCCCAGCGTCCCAGGACTCCCCCGTCAGGAAGAGAGCAGCCAGGACCCTGCTGGAGAGAGGTGCCTCTACCCCTCCTGCCTCCCTAGAGCTCAGCCTCATTCCTGAGGTCAGTGAGCGGGCAGAGCTTGcaaaggaagaggaggagaactTCCCAGCCCCCCAGCCACCCATTGGGACTAAATTGCAGGATGGGTCTGACCCGCAGCCCTTGGACCTGGGGCCACACTGTGAGAACTGGGAGCTGACCCCTGAGCTGAGCCGCAGGGTGCGAGAGACGGCAAACAGCTTGCCCCTGCAGCGCGAGGACACACAGTCGGCCTCCAAGCTCGTCAACCACCTGTTGAGTGAACTCATGAGCTTCCTGAAGGAGAACAAGGAGCAGCCTTTCTTCCAGGAGGCAAAGAGGATGGGCAGCGGCAGCTACTATGAGCTTGTCAAGATCTCTAACCCCAACGAGTTTGACGTGATGTTGCTGCTGCCAACACCGCGGCTGCAGTGGGAGGAGCTCAAGGGGCACAACGGGCTCTTCTACCACGTCTCTGTGGAGCGGCCCACCCGCATGTCGATTCGCCACTTCCTGCTGGAGGATGGCAAAACTGTGTCGGCCACAAACATCCTACAGGAGGCACGCGACCTAGTGAAGAAGTTCATCAGGACCTACACGGGCCCTTGCCCCCATGTCCGCTGGACCATTCAGAGGAAGAAGGCCAGTTCTCCCGCATGCGGGGGACCAGGGGGGCCGATCTCCCTGGATGTGGTGCCTGCACTGGAGGTGCCTCCCTCGCAGGGCTGGCCAGAAGCCGCATTGGAGGGGATGCCGGTGCAGAACTGGCTGGGCAAGAAGGCAAGACGCAACTTCGCCAAGCAGGCTTTCTACTTCGTGCCTAAGCAACCAAGTGGCCGAGGGCTCAGCGATCATGATAAGGAGAGCTGGCGGATCTCGTTCTCACACACCGAGAAGGAGATGATCTGTAACCACGACAGCAACAAGACCTGCTGCGAGAGCTACGCTCGGAACTGCTGCCCGTCCCTCAGTCTGCCCGTGGAAGTAAAGCGCTGTCTGCGAGTGTTGAAGTTTGTGGTGGAGCGCCTGCTGCAGTGCTACCCCCAGGAGCTGGCACCGCTCTGCTCCTACCACGCCAAGACAGTCTTCCTGCACACGCTCTGTGTGCATGGCGATGATGCACAGTGGGTGCCCCGCCACCTGGCCACCCGTGTGCTGGGGCTGCTGTCCGACCTGGAGCACCATGCTCTGACCGGGTGCCTCCCCCACTTCTTCATCACCTCCTGCAACCTGTTTGCTCCCCCTGCCTTCCACCGCCGCGCCCTGGTCTTCCTTCAGGGGAAGTTGATGGAGCAGAGGAAGCTGGGGCTGCCCCTCTTGCAGCAGCCCGCCCCCCCCTCACCTCTGCCCTCTGACCCCAGCccagcccccccagcccccccagccacactcctcccctcctcctcctgcctccCTTTCTCCGTCTGCCTCGGGATGCTGAGTGCACTTCTGGCCCTCCTGTGGGCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 255057 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 295283 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 357774 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 358497 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 525891 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 930 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 19043 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 32521 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 80861 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 118420 12076728 ~ 12144122 (-) True G104568
AMCG00011131 mRNA downstream 1116 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011127 mRNA downstream 14583 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011132 mRNA downstream 22243 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011126 mRNA downstream 27657 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011123 mRNA downstream 35095 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011125 mRNA upstream 9061 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011129 mRNA upstream 20645 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011140 mRNA upstream 33931 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011138 mRNA upstream 45788 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011137 mRNA upstream 56845 12015153 ~ 12033399 (-) True AMCG00011137
TU130270 other downstream 2208331 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2349375 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2715923 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3088450 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 37105 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 109157 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 367789 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 477563 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 589981 12548289 ~ 12548993 (-) True G104715

Expression Profile