RNA id: AMCG00011129


Basic Information

Item Value
RNA id AMCG00011129
length 1608
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00011129
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11978953 ~ 11984808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGCCTATACTATATATCgcttatatattataaataatacttcGAGGCCCCCGTACTGGACCGTCACGACAGCATTGCTCCACCGAAACCCGGGATCTGCCCACAGCTGGGGTTTACAAAGCAGAAGTcgaaacagaaaagcagaagcAGGATAATAAAGAGCAACGCGGAAAAGTCATGTGCATCAGAAATGGTGTCTTAATAGGATTTATAggctattcatttatttcacagtttaaaCATTGGCATGGAATACCCTCCATATAAATCAGGTCAACTAATGAatgaattacaaacaaacatatttcattgtgttctGTCGAAAAGCCATTGTAGGCAATGGGCCGCCCCCGCCTCTCCAGTCATGTGACCGCTGTGTTGAAAGGGTGTCATGTGACCCGGTATGATCTTCCGTGAAAACCGTCAGgcgagggaggcagggaggcaGCGGGCGGGCGGCAGGGCGTCCCGGGCGGTCAGAGCAGTGCGGCGGAGCTGGTCCGCGTCCACATCCGAGCGACGGGCCACACGGTCCGCAGCGCCAGCCAGGTGACCCATGTATGTAGGGTGGGTGTCACGGATGTCCCTTTCCTTGGCTGCGTGAACTGAGCCAGGAGCCTAACGCAATGAACAGGTGACCCCCACCTGACGCCTAGTCTCCTCACCTGACGCCCAGAGGGGGGTGTCCTGCAGATCGGTCTCCATGGCAAAGTACGGCCAGTGCTCCATAAACTCTGCACCTGACGGCACCGATGAGGAGAGCACGCCTCTGCTGGCCAGAGTGGGGGAGGaaccagTGCCGGGGGGTTACCTGGCCGGTCGGCTTGGGGGGCGCTACTTCCTGGGGGGTGGCGTGCTGGGGACTGCCCTCCTCACCCTGCTCACCCCCTCTGCTGCCAGCCTGGGAGTGCCCTGGCTCTTCACCCTCAGAGCTCTGGAGGGATTTggggagGGCGTGACATACCCTGCGATGATGGCCCTGTGGGCGTGCTGGGCCCCCCCACTGGAGCGCTCCCGGCTGGTGTCACTGGCAGTGCCACTGTGGTCCATTGTGGTGGCCCAGGTGTGTTCCAACTGGACCTATTACACTCTGCTCACCTGCCTGCCCACGTACATGGACAACATCCTGCACTTCAACATCAGAGAGGTACAGAGGagtgGCTTGCTGTCTGCACTGCCGTATCTGGGCGGCTGGTTTTGCTCAGTGCTCTCGGGTGTCGTGGCCGATTGCCTCCTGGAGAGGAAGCTGCTGGGTGTCACAGCAGTGCGCAAGATCTTCACTCTCACAGGCACGGAgggtgcgggggggggggtgagacGGAGATTGTATGCTGGGATGCTGCTGGGTATCACCAACACTTTTGGGACGATCCCGGGAATCGTGGCACCCATAGTGGTGGGTCACCTGACCAAGCAGcgCACTATGGCAGAGTGGAGGACAgtgttctgtctgtctgcagcgATCAGTGCGGTGGGGGCTCTGGTCTTCACTGTGTTTGGCACGGGGGAGCCACAGAGTTGGGCGCTGCAGGACACAGAGACTGACACACGGGGGGACACGGAGACTGATGCAAAGGAGGAGAGACGGGTTAGCCGCCTCTCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130682 lncRNA downstream 665 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 7951 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 281894 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 322120 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 384611 11587058 ~ 11594342 (-) True G104342
TU130711 lncRNA upstream 6021 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 54361 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 91920 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 151160 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 171634 12156442 ~ 12156731 (-) True G104598
AMCG00011125 mRNA downstream 8718 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011128 mRNA downstream 20645 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011131 mRNA downstream 27953 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011127 mRNA downstream 41420 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011132 mRNA downstream 49080 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011140 mRNA upstream 7431 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011138 mRNA upstream 19288 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011137 mRNA upstream 30345 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011139 mRNA upstream 68830 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011135 mRNA upstream 81687 12066495 ~ 12069075 (-) True AMCG00011135
TU130270 other downstream 2235168 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2376212 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2742760 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3115287 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 10605 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 82657 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 341289 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 451063 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 563481 12548289 ~ 12548993 (-) True G104715

Expression Profile