RNA id: AMCG00011130


Basic Information

Item Value
RNA id AMCG00011130
length 1808
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00011130
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11891687 ~ 11899248 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAAAACGGGTCCACAGCAGAGCCAGGGCTGGTGCCCCACAAGACGACACGGAGGAGCCACCTCCTGCTACAGACTTTTGTGCTGCCCGGGCCGCCCCTACCTCTAACCCCGCTCACCCGCCCCCATACCCGGGACCCCCTCAAGCTATCATCCATCGTTGCAGTGACACCTCCCTCCATCCTCGCCCCCCGCCACCTGCCAACCCCACCCAGtgtaATGCAGGGCTCTCTGTTCACCACAGGAGAGAGGGCTGTCCTTGAGGGCTTTTCAAGGAGCCGCCGGCGTCCCCTCCACCGCCCTCCCCCCCGTGACCCTGGAGCCCTTCCCCTGCCTGCCCACAGTGCCCCCACTTTGCCAAAGAAAGGAGACATGAGGGGGCAGAGTCAGCCAGTCTACACCCACTTCTCCTGTCCAATCAGGCCTGCTGCTAAGATTCCCAGATCCCGCCCCCGGAGCATGGGCCCGCCTGCAGTGTCCCAGGAGCTCCGCCCCTTGGTGCTGCAGTACCGCTGCTGTGCACTGGCTGAGTCTCTCTCTGTGCGGGGGACTCCCTGCCTCCCCAGACTTCCTCCCCCACAGCCCCGCACACAGCTGCACGTGTTCCTGCCCGCAGGGGGgcagaaggaagaggaggaggaggaggaggaggagaagaaggaaggAGGTCAGGTGGGCGACACTGAGTCAGTGGATGAGGGCTTCATGGAGGAGCTGGACAacGCGGCGGTCATGGCGGTGCTGTTCACGCTCCTGCGGGTCCTGCTGGGTCTGTTCTTCGCTGTGACCGGAGTCGTTAAGCTCACGGACAGGATATCGCAGGACACGTACAGTCTGATGTGCTCCCAGTTTGTCCAGTTTGCGGAGGTGTTCCCACTGCGTGTGGTGGGTGTGGAGGTGGAGCCAGCGCTGTACCAACAGGTGGCAGGGTGGGTGGAGCTAGTGGCAGGCCTGCTGTTGGCGCTGGGGCCTCGCCGACTGCAGGAGCTCAGCAACTTCATTCTGAGCATTGTCATGATGGtggctCTGTTCACTCTGTTGAAGCTGCAGCAGCCACTGGCAATGTGCTGTCCAGCCGCGCTGTGTCTcggcctgctgctgctgctcaacTTCCGCGGGCGGGGGTCCCGGGCCAAGACTGAGTGaccccatgctgacccctgacctcatGCTAAATGCTGACCCCTGTGACCCTCTGACCCACAGGCAGCtgcagtcacacacactgagggacagactgactgatggatagacacagaaagacacacactgaaatgcacacagagacacagactgacacagtgACCCCTCTTTCCTCCTGCATTCCCGTCCTCTCTGCTCGGAAGAACTGCTGTTACCAAAGCGCAGACAATTATGACATCACACATGATTATGACCAATGGCTGTGAAGACTTGAATTCCACAGCTTCCCAAGTGAATCTTGAccagtaaaatacattgttatctGATCctctgtttgtgttattatttctctatttgtattttccaaGGATATATATGTCTCCATTTGATCTTGGAGAGCCAGGAAGACAGTTTAATTACACTGAGATCTTAATGAGTCAATGCCACCAGTTAGTGCCTTACTTGTAATACAGTGTGACTGGGCCCAGCTCCCTGGCCCCAGGGAGAAGCCTCAGCCCATTAGAAGAGGCTCTCCAGTCGCAGGGGGCCTGACATTTGCCCCCCAGTAGCTCCCCCAGCTCCAGCTGTCTGTTGGTCtttgtggtgttttttaatgcttaaataaaacattccaaTCCACACAGAGCTCTCTTCATttccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 194628 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 234854 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 297345 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 298068 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 465462 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 59990 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 78103 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 91581 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 139921 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 177480 12076728 ~ 12144122 (-) True G104568
AMCG00011124 mRNA downstream 589 11872604 ~ 11891098 (-) True AMCG00011124
AMCG00011117 mRNA downstream 31687 11855231 ~ 11860000 (-) True AMCG00011117
AMCG00011118 mRNA downstream 37790 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011119 mRNA downstream 85930 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011113 mRNA downstream 123745 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011123 mRNA upstream 8213 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011126 mRNA upstream 19456 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011132 mRNA upstream 27852 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011127 mRNA upstream 31148 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011131 mRNA upstream 48992 11948240 ~ 11951000 (-) True AMCG00011131
TU130270 other downstream 2147902 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2288946 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2655494 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3028021 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 96165 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 168217 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 426849 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 536623 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 649041 12548289 ~ 12548993 (-) True G104715

Expression Profile