RNA id: AMCG00011131


Basic Information

Item Value
RNA id AMCG00011131
length 690
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00011131
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11948240 ~ 11951000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGCTGCACAGGCGGACACTGCAGCTTAAAAGCCGGCGCCGGAAGTCTGTCGCTCTCTTCTAGTGCTCCAACATGGCGGAACAGGGTGAGAAGAAGGAGAACCCAATGCGTGAGCTGCGGATCCGCAAGCTGTGCCTGAACATCTGTGTGGGTGAGAGCGGTGACAGGCTGACCCGTGCTGCCAAGGTGCTGGAGCAGCTGACCGGACAGACGCCCGTCTTCTCCAAGGCCCGTTACACTGTGCGTTCATTCGGGATCCGCAGGAATGAGAAGATCGCAGTGCACTGCACCGTACGTGGTGCCAAAGCCGAGGAGATCCTGGAGAAGGGCCTCAAGGTGCGCGAGTACGAGCTGAGGAAGAACAACTTCTCGGACACGGGCAACTTCGGCTTTGGCATCCAGGAGCACATCGACCTGGGCATCAAGTATGACCCCAGCATCGGTATCTACGGCCTGGACTTCTACGTGGTTCTGGGCAGGCCCGGGTTCAGCATTGCAGACAAAAAGCAGAAGACTGGTCGTATTGGCGCCAAGCACCGCATCAGCAAGGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGCATCATCCTCCCGGGCAAGTGAGAAGGATGCTGCAGACTCCGCCGCTGTCTCAGTttgtaaaaaatgcaaaatgacaataaaaaaaatacaaaagccaAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042593 glucose homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02868 RP-L11e, RPL11; large subunit ribosomal protein L11e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130580 lncRNA downstream 251181 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 291407 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 353898 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 354621 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 522015 11420749 ~ 11426225 (-) True G104319
TU130673 lncRNA upstream 8238 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 26351 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 39829 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 88169 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 125728 12076728 ~ 12144122 (-) True G104568
AMCG00011127 mRNA downstream 10707 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011132 mRNA downstream 18367 11927100 ~ 11929873 (-) True AMCG00011132
AMCG00011126 mRNA downstream 23781 11918704 ~ 11924459 (-) True AMCG00011126
AMCG00011123 mRNA downstream 31219 11907461 ~ 11917021 (-) True AMCG00011123
AMCG00011130 mRNA downstream 48992 11891687 ~ 11899248 (-) True AMCG00011130
AMCG00011128 mRNA upstream 1116 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011125 mRNA upstream 16369 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011129 mRNA upstream 27953 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011140 mRNA upstream 41239 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011138 mRNA upstream 53096 12004096 ~ 12008953 (-) True AMCG00011138
TU130270 other downstream 2204455 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2345499 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2712047 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3084574 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 44413 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 116465 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 375097 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 484871 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 597289 12548289 ~ 12548993 (-) True G104715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028419 True 611 mRNA 0.51 6 NC_007130.7 43780970 ~ 43786940 (+)
grasscarp (Ctenopharyngodon idella) CI01075562_00000295_00000925.mRNA True 390 mRNA 0.53 3 CI01075562 295 ~ 925 (-)