RNA id: TU130749


Basic Information

Item Value
RNA id TU130749
length 567
RNA type TUCP
GC content 0.61
exon number 2
gene id AMCG00011135
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12066495 ~ 12069079 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAcactgagaggagagaggaggagtgaCTGAGGTAGGAAGGCAGTGAGGGgggtgagacagagagagagagggagcagccTGGTCGGTGTGACAGCACAGAGCCCCACTGCACGGTCATGTTTGGGCTTTGTCCAAATCAAGCCCTGAACCCAGCATTTGTGGGGGTCGGAGGTCAGGGGTCTGAAAGTGGAGGAGTAGGGGGTGTGTCCTCATCCTCCCTGCATCTCCTGAGCAACCTGCAGTCAGACAGGAAGTGCAGTGTGGCCCCTGACAAGGATGGCAACTTCAACTTCCTGGGTcaagaggaagagcaggagggGAAAAGAGGGATGGAGGGCCTGAGCCTGGTGACCCCGGTGATCCCGCTGACTCGTGATGAGAACCTCAACCAACTGGACCCCCCAGCCCAGAAGCAGCAGAGCCAGCAGAACCACCCGGCCCGGCCCAGTCTGCCTCCCCGCCTGCCTTGCTGGAGGAGTCTGGAGCCAGTGCCTGAGGGGGGAGAGGAAGTGGTGAGAGTGCCGCCCGAGGGAGAGGAGGGCCGAGGCAAAGTGgaccgagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130718 lncRNA downstream 28089 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 73126 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 89177 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 96463 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 370406 11663592 ~ 11697059 (-) True G104449
TU130755 lncRNA upstream 7649 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 66889 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 87363 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 305988 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 333285 12402364 ~ 12402564 (-) True G104665
AMCG00011139 mRNA downstream 7840 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011137 mRNA downstream 34066 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011138 mRNA downstream 58512 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011140 mRNA downstream 71531 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011129 mRNA downstream 82657 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011136 mRNA upstream 2588 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011150 mRNA upstream 196428 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 231706 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011151 mRNA upstream 319184 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 358914 12427993 ~ 12439860 (-) False AMCG00011152
TU130712 other downstream 69679 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2323680 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2464724 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2831272 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3203799 8819551 ~ 8863666 (-) False AMCG00011051
TU130831 other upstream 257018 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 366792 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 479210 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 565777 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 873312 12942391 ~ 12943082 (-) False AMCG00011174

Expression Profile