RNA id: AMCG00011136


Basic Information

Item Value
RNA id AMCG00011136
length 4354
RNA type mRNA
GC content 0.59
exon number 23
gene id AMCG00011136
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12071667 ~ 12085428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCGGCTGCGGGATTAACCGCGAATTTATAGGAATTTCGCTTGAATTTGATATACTTACATCTCTACATACTGCATCCGGAGATACAGGCTAGTGGACGTGgcctttaatgatttttaagGCTGTGGAGGTGCTGTctggggacagacagacagctacAGAGGAGAGTGACGTGGACAGTGGGAAGGGAAGTTGTGGAATGGGCTCCCCAGGATGGGCAGAGGGGGGTGCTGTGCCAGTTGTTAGCGCTGAGCAGCAAGACTCTGATGAGGAGGTGACTGTGAACAGGAAGTCTCGCTGCAGGAAGGCGCTGAGAGACAGCGACAGCGAGGCAGAAGAAGGAGTGGGGCTTACTGGGGCTCTTGTCCTATCCGAGTCCAGCGAGGAGGAGCAGATGCAGGAGGGTGATGTCGAGAGTCCAGGGAAGGGGGTGCGCAGAGTTGCTCGGCTCGCTCTAGACAGTGAGGACAGTGAGACGGACAGACAGCCAGATGGGGGCCAGGGTGAAGAGTCCCCTCCCAGGgagaagggaggggagggagcaAGGGAGAGGAAGCCGCAGAGGTCCCAGCGCCGCAGAGAGAAGGCACAGAAGAGGGTGAAGGCTGTGGAGAGGctgaagaagagggagagaggagagCAACTTTCCGCTTCCCTGAATGACAGCGGCTGTCTACTTGGGGACAGTGACCTGTTTGACACGGGCctgggggaggaagaggaggatgaggaggagtcTCTGGAGGCGATCCGGGCAGCCGTGAAGAAGGCGGTCAAGAAACAAAAGGAGCAgggcgaggaggaggaagaggagtcAAAAGGGGACCACAGGGCCGGACGCAAGGAAAGGAAAGCAGCCCGAGCTGGTAGGGAGGCATTGAAACAGCTGCACAGTGAGAGCCAGAGACTCGTCCGAGAGTCGTCCTTGGGGCTGCCGTACCACCTGCCAGAGCCCAAGACCATTGAGCAGTTCTTCAGGAGGAGAGCCCAGCCTGCTGGCCCTGCCATGGCCCTACTGAAGTCCACTAAATACCAGCCCTGCAGCTTAGCTGGTACTTCCCACCCCCAGGAAGACCAGAACCAGCCCAAACAACCCCAGCAGCCTGCGGTGTCGGACCCAGAAGCTCGTCAGGCAGAACCTGAGCCGCATGCGACCTCCCAGAACCCAACTGAAGAGCTGGATCCTGCAGGAGTCCATGAGAGCCCAGCCAGTGTGGATCAGAACCAGGAAGAGCTGGTCACAATGTCAGCTGTCACAGAGCAGAGACTGCTGGTGTGGGAGAACAGCGCTGAAGAGTCCAGTCTGGGGACAGAACCAGTGAAAGAGGGACCTGCAGCTGCTCAGAACCAGGCTGGACAGGAGCTACTGGAACAACAGAGTTTGGAGACAGGGGTGGAAGAGTTGGGGGGCAGGGAGAGTATGCAGGCCACTCCTCTGCCCCCTGCCACCACTGCCCGCAAGGACAGGCTGGCCCGGCTCCGGGAGATGGGGTTGGACCCACTGCCCATGCCCAGACTGTGTCCTGATGATGGTGCCTTCATACAGCTGGAACCCCCTCCTGTCAACTTGGGCCTGGAGAAGCTGAAGCAGAGGTTTCTTCACCACGTCCAGCCTCCCCCACGGGCACGGTCAGAGCGCAGCCTGCAGCTCAGCGTCCTGCGCAAGGACACCACCCCCTCCGGGCAGCTGCAGTTGCTGACCGACACACTGACAGTCACTGTCACTGAGGGAGATGAGGAGCTGCTTTTGTTGAAGTCTCGACTGCAGCTGGCAATGGCCCAGAAGCGTCAGGAGGAGAGGCAGCGGCGGGCAGCTCTGCAGCGTCTGGACAATGAAGAGtgtgaggaagaggaagaggaggaggaagagatgaCAGACGAGTCCGAGGGAGAGCTGCTGGAGACGGGAGATGCAGAGAGTGCCTGTGTCTCTTATAGGGAGCAGACTGGGGATGCATTGAGGAGAGCTGGGCCAACAGGGCTGGAGGGAGACTCCAAAATGGtctcAGAGGAAGATGACTCCCTGCCCAAGGACAACAGCCACAACAGCAGCTTTGAGCTGATTGGTTCCATGATCCCATCCTACCAGCCAGTGAACAGGGCAGCTGGTAGGGGTGTGTCTGCCGGAGTGTTCCGCTCGCCGTCCCCGGGATTCTATAGGCCCAGCTTCCTCAGCTCCACCTCCAAGAGCTCAGGGAAGTTGTCAGacccctccctgtctctgtccctgccAGTGGAAGACTCCCAGGACCTGTATGCCCCCCCATCTCCTGCTGAGGCTGGTCCTGGGCCCCTGGGAGCCGGGGACTCACAAGGCCGCTTCTCCCTGGAGGAGGACACCCACAGCCAGCTGCTGGATGCTGACGGCTTCCTGAACGTGGGCCCACGAGGTGCTGGGCCAGGCCAATACCGCAGCCTGGGCCAGAACCACAAGCGGCAGTTGCTGCTGGACAGTCTGGACGAGAACGCCATGGATGCCAACATGGGCGAGCTGCTAGGTCTCTGCTCTGGCGGCTTTGGCACACGGCACCACTCCGGCCCTGGCCACAGTGGGGAGCCAGCCACCACTAGCCAGGACAGCACTGTGGGTGAGCTGCTGGGGCTCTGCTCAGGTGGCTTCGGCACACCGGACTGTGCCACGCAGCGGGGTAGAGCAGAAGAGGCCCCGCCACGGGACATCCCTGTGCTGGGGCGGCAGGAGGAGCCTGGCTCAGACACGGATAGGGATGAGCTGCTGGCTCTGTGCTCTGGGAAATTCATGACTCCAGAATGCTCACCCTCCCATTCCTCCTCCAGTGCTTCTGCACAGACTGAGACTGGCCCCAGAGACAGGAtggagcagagagaggaggaggaggagcaggaggaggaagactgCGAGTTTCACCTGCTGTCAGATGTGGGCAGCCTGAGTGACCAGGAGGGGAGCGAGGAAGAGGAGCAGGCAGAGGAAGATGATGGAGAGAacgagggagaggaggaggaggatgaagaggagGCTATGGCCCGACGAGGAGTGAAGCGCAGGATgcgTCTGGCTCAGTtcctggaggaggaggcagagctgTCGGGCAGTGAGCTGGGCAGTGAGGATGAGGAGGACGAGGGCGAGGGCAGTGAGTACGAGGAAGAGGAGTTGCAGGAGGAGCTGCCTTCAGATGAGGAGCTCCAGGACCAGGTCAACAGGATCCACATGAAGCAGGTGCTGGATGATGACAAGCGACGACTGCGTCTGTATCAGGAGCGCTATCTCGCAGACGGGGACCTGCACTCTGATGGGCCGGGCCGGGCCAGGCGCTTCCGCTGGAAAAACATTGATGAGCTGCTAGAGGCAGGGCTGGCGGGGGGTGatgagcaggaggaggaggaagaggaggatctGGACGAGGCTGAGGTGCAGAGGAGGAAGAACAGGCTGGAAAGAGAGCAGTGGTTGCgagagcagAGCTCCAGCACAGAGGCacagaaggaggaggaagaggaggaggaggaagacatcGGCGAGGAAAGTCAGTTCATGAAGTTGGCCAAGAAATTTACCACCAAGAAACTGCAGCAGAAAGAAGCACCCCTGGTACCCAAGGAGACGAAGgtgCGGAGAGGCTCTTTGCTCAGTCAGCCCCGGGCCGTGCTGCAGAAGCTGGCCTCCCTGTCTGACCTGGCCCCCGGCGCCCCGCGCAGCTCTCGCGGCTTCCTGTTCCACACACTGACGCctgagaaggagggaggggccGAGCGCCTGGCCGCACAGGGGAAGAAACGCAGTAAGATGCACAGTGGAGCCCCTCCAGCCAAAAAGCCCTGCATAGAGGCCCCCACCGCCTCCAAGCTCAGCATCTTCCGCTATCTAGAGAGCTGAGGAGCCCAGGATGTGGGTGGGAGGGGTGTGCACTGAGCACTGGACAGAAAGCAGGAGACAGTGTGGCTGTGCTGAGGAGGGTCAGGAGGTCAGAGAGAGATACCaaatacacgcacacactcaaTGTCACACTCGCTTCAATACAAACATGCTCTCGCTCATACACATAGCACTTATCTCTGCTTTCTGTCACACTTGAGCTCTCGCACAGAACCTGGGCTGCCCTGTGCCCCCCGCCCTGCTGCTCAGAACCACAGTGTTGACCACAGGACCCCACTGCTCCTAGGGGGCAGTGATTGTCAGACTTCCAGAACATGTACACCACCCCCTATAAGAACCCTCGCTGGACCCCTAGGAACCTCCTTGgtagaattttttttaatcagattttaatgttcagttttatttttaaattgtaaatggcTATAGTTATTTTCTATTGTGTTTTCAAGCTGTATAttaaagattttaataaaaaaatatatatgtaaaaa

Function

GO:

id name namespace
GO:0005657 replication fork cellular_component
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130718 lncRNA downstream 32291 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 77328 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 93379 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 100665 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 374608 11663592 ~ 11697059 (-) True G104449
TU130781 lncRNA upstream 50540 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 71014 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 289639 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 316936 12402364 ~ 12402564 (-) True G104665
TU130906 lncRNA upstream 344537 12429965 ~ 12493101 (-) True G104680
AMCG00011135 mRNA downstream 2592 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011139 mRNA downstream 12042 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011137 mRNA downstream 38268 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011138 mRNA downstream 62714 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011140 mRNA downstream 75733 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011150 mRNA upstream 180079 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 215357 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011151 mRNA upstream 302835 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 342565 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011159 mRNA upstream 411919 12497347 ~ 12499099 (-) True AMCG00011159
TU130749 other downstream 2588 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 73881 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2327882 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2468926 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2835474 9234411 ~ 9236193 (-) False AMCG00011058
TU130831 other upstream 240669 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 350443 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 462861 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 549428 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 856963 12942391 ~ 12943082 (-) False AMCG00011174

Expression Profile