RNA id: AMCG00011137


Basic Information

Item Value
RNA id AMCG00011137
length 5261
RNA type mRNA
GC content 0.58
exon number 24
gene id AMCG00011137
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12015153 ~ 12033399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGTGATGAACGCAAACAGCACGCCGAGGCAGCGCTCGACCAGTACGTCACCAGTACGTCACCAGCCGTCACAGAGGCGCGCAGCACTGTGGGTAGGGCCGGCCGGCACAGCGGGGCGGAAGTGTGTCTGCAGGCCGTGCAATATGCAGTCCAGCGAGGTGACGAGAACAGGCAGAGCACCGAGCCGAACCGGGCCAGCAGCAGGGGTCTGAGCCCGGCCAGCGACAGCCGCCACACTGTGCCGCGCACACCTGCCTTGTCAGACCTGCCTTTgacggacagagagagcaagagggaCGGATATAAGAGAGACGCGGTGCCGGCGCGGATCTGCACGGCAGGGCTCCCGGGCTGTGCAGCGGTGCAGTGCGCAACCGGCCCCCGTCTCCCTCTCACTCCGCCGCGGTCACTTTACACCTGTCCGCCTGAGCGCCCCTGTTCGGGACACtggagagggggaaggagtGAGTGGACGGCGGCACAGGTGGTGGAGAATGCCCTGTCCTCGCAGTGTGGTGCGGTGCTGTTGGCGCTCTCCGTGCAGTATTAAAAATGGACACTGGTAGCAAGCCTCAAACCACAACTCTCCTGAGTCTGATTGGTCTGAGCCCTGTGGCCTGTGCGGGACCTTTCAGACTCCTCCTCCTATCGCTGACTTGCTTGTGCTCCTGGTTCCCACCCACAGGCTGCAGTGCCCCAGGCTGTGTTGTAGGGGAGTCGGTGTGGGGGGTGCAGTGGAGCAGTGTGAGTTTTGAGGGGTGGCGCGCACTGCCTGCAGGGGGCACGGGGTGGGCCTGTGTGACGCAGTGCTGCCGACAGCCTGCCTGTAGTGCCGTTTGGAGCCGGGGAGGGCTCTGTGTCCTGCTGACCTGTCCTGCCCTGGGAGGCTGCCGGCTGCCCCCCGCTTCTCTGCCCCCCCTGACCACCCCCCGCCATGGCCTGCTGCGACTGCTCAGCCCCCGCGGTGgagggatgagaaggaggaggagtgaAGACGGAGGGAAAGGCAGCCTGGAGAGTGCAAACAGCCCCCGCCACACATCCCAGGACCAGCCTCCAGGCCCTGGTGTACCCAAGCTGTCCAGCCCCCCCCAGCCCACCCCTCCAGTGACTGCAGCCTATCCTACTGCTCTCACCCTCAAGGACATTAAGAAAGATGACCCACACACCAATGGCAGTACCGAGCCATTGGCTCCTCCTCCTACAAGGCAAAGCCCTCCCCCCTCCAGCGGGACTGACACCATTGCAGCATCCAATACCAGCATCTCCAAAGGGTCGCCTCCACCTACAACCCCAACTACACTCGCCCCCACCACACCGACACCAGCTGtgcGGGAGTTGGTGGTGTCTGCGGGGAATAGTGTGGAGGTGACGCTACCGCGCAATGAGGTGGAGCTCAACGCTTTCGTCCTGCCAGAGCTTCCTGCTGGCTCTGACTATGTATTTGACTGGCGCCTGATCACTCACCCGCGCGACTACAGCGGAGAGATGGAGGGCAAACACAGCAAGACCCTGAAACTGAGCAAGCTGACAGTGGGGCTGTATGAGTTCAAGGTGCTcgtggagggagagggagcccATGGAGAGGGATACGTCAACGTCACTGTGAAGCCAGagcccCGTGTTAATAAGCCACCGGTTGCTGTGGTTTCCCCAAAGTTCCAGGAGATCTCCTTGCCGACCAGCTCCACGGTGATTGACGGCAGCCagaGCACTGATGATGATGGCATCGTGTCCTGGCATTGGGAGGAGTTGCGGGGGCCGCTGCGGGAGGAGAAGGTCTCGGCAGACACGCCCATCCTCACCCTCACCAACCTGGTGCCCGGCAACTACACCTTTAGCCTAATGGTGACGGACTCAGATGGGGCACAGAACTCCACGCTTGCCACGCTGGCGGTCAACAAGGCAGTGGACTACCGGCCAGTGGCCAATGCTGGGCCCAACCAGGTCATCACCCTGCCACGCAACTCCATCACATTGCTCGGCAACCAGAGCAGCGACGACCACGGCACCCTGGCCTATGAGTGGTCACTCAGCCCTGCCTCCAAGGGCAAGGTGGTCGAGATGCAGggtgtgAGGACATCCACTCTGCAGCTGTCCGCGATGCAGGAGGGTGACTACACCTTCCAGCTGACCGTGACAGACTCCGCTGGACAGCAGGATACTGCAGAAGTCACTGTTATTGTCCAGCCAGAGAATAACAAGGCACCAGTGGCTGACGCAGGACCGGAGAAGGAGCTGACCCTGCCTGTTGACCACACCTCTCTGGACGGCAGCAAGAGCAGTGATGACCAGAGTATAACCACCTATCACTGGACACAAAGTGGAGGGCCGGCCGGGGCGCGGCTGGAGAATGCGGACAGTGCAGTTGCCACAGTGACGGGGCTGCAGGTGGGCGTGTATGAGTTCACACTGAGCGTGACGGACGAGCGCGGGCTCCAGGGCACGGACACAGTGAGCGTCATAGTGAGGGACGAGATGGACCAGGCACCGGTGGCCAAGGTGGCCGCAGGGGTGCGGGTCAGTCTCCCTGTCCGCACGGCTACACTGGACGGTTCGCACTCCACTGACGATAAGGGTGTGGTCAGCTACGTGTGGACCCGAGACGAGAACAGCCCTGCTGCTGGGGAGGTGTTGAATAACTCTGACCATCAGGCGGTGCTATTGCTGGGTAACCTGGTGGAGGGCAAGTACACCTTCACCCTGATGGTGACAGACAGCAAAGGCCAGAGCAGCTTTGACCATGGCACTGTGGAGGTCAGGCCAgACCCGTGGGTCCGGGAGCAAGTGGAACTGGTTCTGGACGTGCCGGTGGCCCAGCTGACCCAGCGGCAGCGCGGTATGCTCCTGCGCCAGGTGGGGGTGCTACTGGGAGTCCTGGACAGCGACATTGTGGTTCGAGAGGTCAGCGCCTTCAACGAGCTCAGTACTCGGTTGGTGTTCCTGGTGCTGGGGGGACCAGGGCGCCCCCCCCTGTCTGGCCGGGACGTTGCCATGACACTGCGCAGCAAACTGAGGAAACAGAAGAATGACTTCCTGATATTCAGAGCCAGGAGAGTGGACACTGTCATCTGCCAGCTGAACTGCTCGGGTCACGGCCAGTGCGACTCGTTCTCCCGGAGCTGCGTGTGCCACCCCTTCTGGATGGAGAACTTCCTGCTCACACAGCTGGGCGACAGCGAGAGCAACTGCGAGTGGAGTGTTCTGTATGTTACCATCGCTTCATTCCTGATCGTGGTTGCCATAGGGACCCTGGTGTGGGGAGTGGTGTGCTGCTGTCGCaggAGGCGTGGGAGAGTGCGCAGGAAGAGCCGCTATAAGATGCTGGAGGCAGAGGAGCAGGATAGCCTGGAGCTACAGCCACCTAGAGGAGtgCGAGCGAAGCCCCCACCACCTCCACCCTCTTCCTCCCTGATGCGCTCAGACTCTGAGCTGGACAGTGATGAGGGGGCCACGGGCTGGCCTGAGCGGGGGCAGCTGCTGCGCCCCCAGAATGGCTCTGTGCGCAACGGCCAGGGACCCCTAAGAGCCAAGAAACAGCGCGAGGAGCTGCTATAGACCACCCTGGGGCAGGAGGGCCGCACCACAGACAGAGACTGGCCACACTGAACccgacacagacacactcgcacaccaactcactcacacacacccacacacactcgcacactcTGGTAACCCGTCACTGTGAAGCCGGAGGGAGCTGCTGCACCCCAAAGCTGAAGTATGCAATGTTCCCACTCCCAGAAGACGCAGAGAGACTGTGTCCCACCGAGGACAGGTCTGATACACCACTGGGGTACCCCAACTAAAACACCCCAAACCCCCAAACCCACTGTGAGCCAAGAGACTGAGACAACACAGGCTGTACCCCCAGCGGCACACAAACCCaccaacagagagagagcgcaggAGATAGCGGGTGGTACAGCTACAGCAGCGCGGAGGACTCGGAATACCACCAGTAATAATGCTGTGGATTAATAATGGACGGGGACAGAGGCCCTGACACACAGCCTGCTGCAGTGGGGGCGGGGCAAAAGCACCCTTCCACCCTGAAGCTCTGCATGCACCCCCACCCTGAGAGCCCCCCACAGCCGGGGAGAAGCAGGGCAAGGGCACTGGGGCAGCCCTGGAAGACCCCCCTGCACCCCAGAACACTGGAGCCAGACAGCCAGACACAGCGATACACTGAacgcagagtgtgtgtgtgtttgtttgttgcgtgcgtgcgtgtgtgtgtcagtgtgtgatgaGATTCCTACAGGTGTAACTTTCCTCTCCCTTTTCTTCCTCAGTTTTAATTGTTCTTATTTATGATTGCACGTGATTGGGGAGACAGGATTTCTGCTGCTGTAACCATGGCATTATGTCGTCTAGAAATCTGTAACCCCCcccacctgtctgtctgtgtgtttgtcaatCTGAGGCTGACACAGGAGGTGGGACATTCAAATTGGGAGAAGCCGagaatttttatacattttgttgttgttttggatcAGACTGAGAATTCtgggaaaatgttttaatcacaCTGGattcctgcccccccacccccaggttATAGAGAGCCCTGGCTCAGTGAAAAGGGGTGGCATGAGGGCATGGCACTCATCTTGTTTCCTGATTGCTTGATTCAGGCTGGAGGAATTGCATGGTCTGCTTTTaggtgtgttgttttctgttagtttaattccatttcctgtttttctgtttacCTGCtgattatagttttatttaattttgtttttcgtttgtttgtttgtttgtttgttttattattttctgctcAGGCTCTGAGAGCTACTGCCGAAGAGCGAATCTGCACAACACGACTGTGAATGTAGAGTACTATACAGGGTAGTACAGGGCagggtaatttattttttggcccTGTTGTGCCATATGGTGCAATTCATTTTGCTACAGGGCAGTAGTATGTCACTGTAGAGTACAGAGCATTGAAGTGCAGTACAGCGCAGTATACTGTGGCACACCAGACACTGCAGCGCACTGTAGCAGTCAGTGTGCTGAGGGACAGCGTCCCGTACTGCAGTGTGAAGGCAGCCAGGCAGGCAGGCATTATGTTGTTCAGTCAGGCAGGCAGGAGTCTGTAGCCACCAAGCAATGAAGGGATTGTTTAGTTATGATTTTAACTGTCTGTTTAGTCTGTTTGTTGATAATGTTTAGTTTTACCTGGAGAATGTGGTGAGTGTGTCCTGTGGCTCAACTGGACTGTCAGAAAATAAAGAGAAG

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24404 KIAA0319L; dyslexia-associated protein KIAA0319-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130711 lncRNA downstream 20814 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 36865 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 44151 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 318094 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 358320 11649005 ~ 11656833 (-) True G104376
TU130718 lncRNA upstream 5770 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 43329 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 102569 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 123043 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 341668 12375067 ~ 12379667 (-) True G104660
AMCG00011138 mRNA downstream 6200 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011140 mRNA downstream 19219 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011129 mRNA downstream 30345 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011125 mRNA downstream 44918 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011128 mRNA downstream 56845 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011139 mRNA upstream 20239 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011135 mRNA upstream 33096 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011136 mRNA upstream 38268 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011150 mRNA upstream 232108 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 267386 12300785 ~ 12306207 (-) True AMCG00011149
TU130712 other downstream 17367 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2271368 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2412412 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2778960 9234411 ~ 9236193 (-) False AMCG00011058
TU129988 other downstream 3151487 8854905 ~ 8863666 (-) False AMCG00011051
TU130749 other upstream 34066 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 292698 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 402472 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 514890 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 601457 12634856 ~ 12640227 (-) True G104749

Expression Profile