RNA id: AMCG00011139


Basic Information

Item Value
RNA id AMCG00011139
length 934
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00011139
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12053638 ~ 12059625 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTCCAGCGTCCGTGTCTCCATATTTGCTGTGTAATATTAAGTTACGTCCGGTTTGCGATCCGACAGAAAGCTGAGACAGAACACTTACGGGTCTGAAACACTAACATAGTGAAACAGGGAGACCCGTTCGCCCGGTAAACGCTCCGGTTTTGAAGATGGAATATCTAATCGGAATCCAGGGGCCCGACTTTGTTTTAGTCGCCGCCGACAATGTGGCCGCCAGCAGCATCATCCAGATGAAACACGACTATGACAAGATGTTCAAACTGAGTGAGAAGATCCTGCTGTTGTGTGTAGGCGAGGCGGGTGACACTGTGCAGTTCGCAGAGTACATCCAGAAGAATGTGCAGCTGTACAAGATGAGGAACGggTATGAGCTCAGTCCTGCTGCTGCCGCCAATTTCACACGGAAGAACCTGGCAGACTACCTGCGGAGTCGGACGCCATACCATGTGAACCTTCTTCTGGCGGGCTGTGATGAGGCCGAGGGGCCGGCGCTGTACTACATGGATTACCTGTCCTCTCTGGCCCGCGCACCTTTCGCTGCCCACGGCTATGGCGCCTTCCTCACCCTGTCCATCCTGGACCGCTACTATCGCCCTGATCTGACCCGAGAGGAAGCAGTGGAGCTGTTAAAAAAGTGCCTGGAAGAGtTGAATAAGCGGTTTATCCTGCACCTTCCTTCCTTCACTGTGCGTCTAATTGACAAGGACGGGATCCACGACATGGAGAAACTGCCACTGGCTGcaccctgacctctgaccccaacCCCTGGCCTGCTTTTGTACTGGACCCCTTGTACCCCTTTTTAACCCCAATAAAGTCCATAACACACAGAGCCTCTGTTTGTCTGAGAGTCTGTGCATGTCTATGtatttaatactgtttatttggtttagtattttacatttcataaaataaaaacaattcaa

Function

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02734 PSMB2; 20S proteasome subunit beta 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130718 lncRNA downstream 14262 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 59299 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 75350 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 82636 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 356579 11663592 ~ 11697059 (-) True G104449
TU130755 lncRNA upstream 17103 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 76343 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 96817 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 315442 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 342739 12402364 ~ 12402564 (-) True G104665
AMCG00011137 mRNA downstream 20239 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011138 mRNA downstream 44685 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011140 mRNA downstream 57704 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011129 mRNA downstream 68830 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011125 mRNA downstream 83403 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011135 mRNA upstream 6870 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011136 mRNA upstream 12042 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011150 mRNA upstream 205882 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 241160 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011151 mRNA upstream 328638 12388263 ~ 12402070 (-) True AMCG00011151
TU130712 other downstream 55852 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2309853 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2450897 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2817445 9234411 ~ 9236193 (-) False AMCG00011058
TU129988 other downstream 3189972 8854905 ~ 8863666 (-) False AMCG00011051
TU130749 other upstream 7840 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 266472 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 376246 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 488664 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 575231 12634856 ~ 12640227 (-) True G104749

Expression Profile