RNA id: AMCG00011140


Basic Information

Item Value
RNA id AMCG00011140
length 978
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00011140
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11990829 ~ 11997786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgATGGCTGAGCTGGCGAGTCTGGTGCAGAGGTTAGAGGTCGCCGTGGGGCGCCTCGAAGCCGCAACGGGGTCTGGGGGGGCTGCCCAAGCAGGTGGCGGAGCTGGCGGAGTGTATGTGGAGGCATTTGACACCCTGCTGTCTGGTGCACTGGCCCAGTACTACTCCCTAAGCCAACACATTGGGGGCGATGTCAAGAAGCATGGTCCTGTGGCTTCAGCCTCTGTGGCCCCACCTCCAGCACCTGGTGGAgctccaccccctcctcccccaggcCCACCCCCACCTTCTGATGTCTGCCAATCCTCCAGCACCGGGGGTGGATCAGAATTATCTCACTCCGCCCTGTTCGCCGAGATCAACAAGGGATCTGACATCACCAGGGGACTGAAGCATGTCTCTGATGATCAGAAGACCCATAAGAACCCGGCTCTGAAGGCCCAGTCCGGCGCTGTCCGCACTGGCCCCAAGCCCTTCTCTGCCCCCACACCACGCACTGCTGTTGCTGCCCCTACCAAAAGCACACAGCCCCCTCTGCTGGAGCTGGAGGGCAAGAAGTGGAGAGTGGAGTACCAGGAGGGTGCGCAGGGGCTGATTATCAGTGAGACAGAGCTGAAGCAGGTGGTCTACGCCTTCAAGTGCAACAACAGCACCCTGCAGGTCAAGGGCAAGATCAACTCCATCATCATTGATAACTGCAGGAAGTTGGGCCTGGTGTTTGATGATGTCGTTGGTATCGTGGAGATTATCAACTGCAGGGATGTCAAGATCCAGgtGATGGGGAAGGTTCCCACCATCTCCATCAATAAGACAGACGGTTGCCATGTGTATCTGAGCCCCGCCTCCCTGCAGTGTGAGATCATCAGCGCTAAGAGCTCGGAGATGAACATCCTGACTGAGCTCCCAGTACCAGAGCAGTTTAAGACTGTCTGGGATGGCAAGAAGCTGGTCACCACGGCAACAGAGATCGCAGGATAG

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130682 lncRNA downstream 13951 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 21237 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 295180 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 335406 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 397897 11587058 ~ 11594342 (-) True G104342
TU130718 lncRNA upstream 43235 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 80794 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 140034 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 160508 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 379133 12375067 ~ 12379667 (-) True G104660
AMCG00011129 mRNA downstream 7431 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011125 mRNA downstream 22004 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011128 mRNA downstream 33931 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011131 mRNA downstream 41239 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011127 mRNA downstream 54706 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011138 mRNA upstream 8162 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011137 mRNA upstream 19219 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011139 mRNA upstream 57704 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011135 mRNA upstream 70561 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011136 mRNA upstream 75733 12071667 ~ 12085428 (-) True AMCG00011136
TU130270 other downstream 2248454 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2389498 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2756046 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3128573 8819551 ~ 8863666 (-) False AMCG00011051
TU130749 other upstream 71531 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 330163 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 439937 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 552355 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 638922 12634856 ~ 12640227 (-) True G104749

Expression Profile