RNA id: TU130711


Basic Information

Item Value
RNA id TU130711
length 2300
lncRNA type sense_over
GC content 0.49
exon number 8
gene id AMCG00011140
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11990829 ~ 11997786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtgtgtgtgtgtgcgcgtgcagGGACAAGCAGCACGTGGAGTGGGTGAAGGCATACCTGTCCATCTGGACTGAGCTGCAGGCCTACATCAAACAGTACCACACCACCGGGCTGAGCTGGAGCAAGGCTGGTCCTGTGGCTTCAGCCTCTGTGGCCCCACCTCCAGCACCTGGTGGAgctccaccccctcctcccccaggcCCACCCCCACCTTCTGATGTCTGCCAATCCTCCAGCACCGGGGGTGGATCAGAATTATCTCACTCCGCCCTGTTCGCCGAGATCAACAAGGGATCTGACATCACCAGGGGACTGAAGCATGTCTCTGATGATCAGAAGACCCATAAGAACCCGGCTCTGAAGGCCCAGTCCGGCGCTGTCCGCACTGGCCCCAAGCCCTTCTCTGCCCCCACACCACGCACTGCTGTTGCTGCCCCTACCAAAAGCACACAGCCCCCTCTGCTGGAGCTGGAGGGCAAGAAGTGGAGAGTGGAGTACCAGGAGGGTGCGCAGGGGCTGATTATCAGTGAGACAGAGCTGAAGCAGGTGGTCTACGCCTTCAAGTGCAACAACAGCACCCTGCAGGTCAAGGGCAAGATCAACTCCATCATCATTGATAACTGCAGGAAGTTGGGCCTGGTGTTTGATGATGTCGTTGGTATCGTGGAGATTATCAACTGCAGGGATGTCAAGATCCAGgtGATGGGGAAGGTTCCCACCATCTCCATCAATAAGACAGACGGTTGCCATGTGTATCTGAGCCCCGCCTCCCTGCAGTGTGAGATCATCAGCGCTAAGAGCTCGGAGATGAACATCCTGGTGCCGGGAGAGGGCGGGGACTATACTGAGCTCCCAGTACCAGAGCAGTTTAAGACTGTCTGGGATGGCAAGAAGCTGGTCACCACGGCAACAGAGATCGCAGGATAGAGGACGGCCAATCATAGACCGCCCTCTTTGCTCCTCCCCCATTAATCAATGCCCAACCACTCAATCGCATAGCAGGCTGTGACTGCCCCACCATCACCCAATCAGAGCTCCTGCTGCTGATGCTGTTTATTCCTAGCCAATGAAAGGACAGCTTTGCTTTAAACTGAGTTTTCCTTCAGCCAATCACAGGGAGTGACTCACATCtataattttcttattttttacaatGGGTATTAACATCAGCCAATGGGAAAGCAacttacatttctttattgCCAACAGCCAATCAGGGCTTGCTTCcaattaaagaggaaaaaactaTCCCCTTTAACATTTTAGCCAATCAGGTGGAGCGTGGGGATTGTGAGGGccaatggaaaagaaaagaaaaaaaaaagggggtttTGCTTGTTTCCCCTCAACTAATTAGGGCAGCAGAATCAGTCACATAGGTTCCTGTAGCCCATCAAGACAGGGTTGTatcttttttttgcttgttttttgtaagCATGGTATTGAGGGCGCTAGGGGTTTAATCCAGTCTGTCTGTCGTGTCTATTTCATAAATATGCAATTTCAACACAAAGCACATGTGGATTCTGTACAACCTCTAGTTTGTGTCCCTCTTAATGGTGATATTACtaattataatgaaattaataataataataataatcaaaatcactGAGGTTTTAGTTTATACCAGTGGAGAACGGTTAGAGAATGTGTCTGTGGTggtttctctctccctcgtATTCATattaaagcaacacaaaagtaaaaaaaaaagaaaagaaaaaagttctCAAAATAAATCTTAGATTTTTGCTTTATCTTAAGTTGTGACCCTTTCTGCATCCTCTTCCTCGTTTTCTGTGCTGCAGTAGAGATTTCCAAATGATTCTCTCCCCCATCGTTTGTTTGCAAATTCAGACATACACATCTGGTGGAGGGAGAGGTagaaggggaggagagagacagaaagggagGAAGAAAGGTATAGAGGAAAGGGAGAGATGCAGTGAATAGAGGTGAAGTGAAGGAGCATTCACAGCGATAGGAGGAATAGAGAATCCTTGCTCCCCACCCACCcacatttcctctctctcttcccccccccccccctccatctgTCTGCATCCATGTGTGTTGTTCACGGGGGtaaggaggtgggggggtgtcacaggtcaccatcaccatcaccatcaccctCACTGTCCATTCCCTCTCTTGTGGGCTGTGGTCACTGTGTGTATAGAGCTAAACGCAGAAATGCAGGTTTGATCTGTAGTcacccctgtctgtctgtccagggCTTTTAGGGTAGAGCTTTCCGTCTCAGTTGCCAAGTGGCACTTTCTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130682 lncRNA downstream 12541 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 19827 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 293770 11663592 ~ 11697059 (-) True G104449
TU130492 lncRNA downstream 333996 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 396487 11587058 ~ 11594342 (-) True G104342
TU130718 lncRNA upstream 44830 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 82389 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA upstream 141629 12135968 ~ 12142015 (-) True G104591
TU130789 lncRNA upstream 162103 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 380728 12375067 ~ 12379667 (-) True G104660
AMCG00011129 mRNA downstream 6021 11978953 ~ 11984808 (-) True AMCG00011129
AMCG00011125 mRNA downstream 20594 11967369 ~ 11970235 (-) False AMCG00011125
AMCG00011128 mRNA downstream 32521 11952116 ~ 11958308 (-) True AMCG00011128
AMCG00011131 mRNA downstream 39829 11948240 ~ 11951000 (-) True AMCG00011131
AMCG00011127 mRNA downstream 53296 11930396 ~ 11937533 (-) True AMCG00011127
AMCG00011138 mRNA upstream 9757 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011137 mRNA upstream 20814 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011139 mRNA upstream 59299 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011135 mRNA upstream 72156 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011136 mRNA upstream 77328 12071667 ~ 12085428 (-) True AMCG00011136
TU130270 other downstream 2247044 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2388088 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2754636 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 3127163 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 1074 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 73126 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 331758 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 441532 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 553950 12548289 ~ 12548993 (-) True G104715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028444 False 3214 mRNA 0.44 13 NC_007130.7 46158078 ~ 46210904 (+)