RNA id: TU130734


Basic Information

Item Value
RNA id TU130734
length 1287
lncRNA type sense_over
GC content 0.55
exon number 2
gene id AMCG00011141
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12067451 ~ 12140465 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccctccctctctccctctcggtcCACTTTGCCTCGGCCCTCCTCTCCCTCGGGCGGCACTCTCACCACTTCCTCTCCCCCCTCAGGCACTGGCTCCAGACTCCTCCAGCAAGGCAGGCGGGGAGGCAGACTGGGCCGGGCCGGGTGGTTCTGCTGGCTCTGCTGCTTCTGGGCTGGGGGGTCCAGTTGGTTGAGGTTCTCATCACGAGTCAGCGGGATCACCGGGGTCACCAGGCTCAGGCCCTCCATCCCTCTTTTCccctcctgctcttcctcttgACCCAGGAAGTTGAAGTTGCCATCCTTGTCAGGGGCCACACTGCACTTCCTGTCTGACTGCAGGTTGCTCAGGAGATGCAGGGAGGATGAGGACACACCCCCTACTCCTCCACTTTCAGACCCCTGACCTCCGACCCCCACAAATGCTGGGTTCAGGGCTTGATTTGGACAAAGCCCAAACATGACCTGCCaagacagagggggagagagggagagAGTGGTGGGGGATTGGACGGAAACTCGCCTGACACAGCTGCCCTGAGCACTGAACCACAGCACTGCTgcactgagagggagagagggagagaggtcaTGCAGCGCAGAGCAGTGTGGCTGTGAGCGGGGTGGAGCAGACTTAGGCTTAGGCAGGGAAGTGGTAGGTGGTAAAGACTCCATTGGCCTACACAAGGTCCTGTGCAGCAGTGCCAGACATGCTGTGTCAGGGGAGTGCCCCCAGGTCCCTGAAGGATACTCTAGATTTGGAAACACTGCACCTCAGTTACCTTGGTATGCTGCATATTGTACTGAATAATGAACAGTAAATATTGCTTTGGATACAGTATAATGCGCTTGATAATGCCTGATTAAATATACTTAACTACTTTAGAATTATAATGAGAAGATCTCTTGTCTTAACACTTTTCTGACTTTGGATTTTGTCCTAAGATGAGCCTTTATTTTGTcgtcatattttatttttgttttgtttcacgtGTTTTGATctgctctgtgtatttattgcaaatgtctgtctgtgtgctgcagaTTCGCCACCAGGGTTTGGCGGAGTGGGGAGGGCTCAGTGGAACGCTcgggctgtgtttgtgttggtcGCCAGTCTCTGCAGACAGGTGTGTGGGGGCACTGAAGGGAGCGGCGGGGCTGTGTGTGGGGGAGAGGGATAGTTTGTGGTCTCGGTGCCCTCCCcgactgtctgtgtgtggaatTCACAGAGCAGAGCTGGCGGGGTTATCACAACCCCAccagctccctctctcctgctgccAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130681 lncRNA upstream 89086 11977236 ~ 11978365 (+) True G104512
TU130628 lncRNA upstream 117739 11948240 ~ 11949712 (+) True G104477
TU130646 lncRNA upstream 135165 11930208 ~ 11932286 (+) True G104489
TU130645 lncRNA upstream 137437 11929213 ~ 11930014 (+) True G104488
TU130639 lncRNA upstream 146254 11919874 ~ 11921197 (+) True G104483
TU130787 lncRNA downstream 10900 12151365 ~ 12151633 (+) True G104596
TU130798 lncRNA downstream 109794 12250259 ~ 12254820 (+) True G104603
TU130804 lncRNA downstream 119147 12259612 ~ 12259861 (+) True G104609
TU130827 lncRNA downstream 192863 12333328 ~ 12334214 (+) True G104627
TU130882 lncRNA downstream 289031 12429496 ~ 12434556 (+) True G104666
AMCG00011134 mRNA upstream 16871 12045035 ~ 12050580 (+) True AMCG00011134
AMCG00011133 mRNA upstream 29078 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011120 mRNA upstream 78539 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011121 mRNA upstream 100456 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011122 mRNA upstream 121450 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011142 mRNA downstream 3397 12143862 ~ 12148439 (+) True AMCG00011142
AMCG00011146 mRNA downstream 144407 12284872 ~ 12300928 (+) True AMCG00011146
AMCG00011147 mRNA downstream 173019 12313484 ~ 12322097 (+) True AMCG00011147
AMCG00011143 mRNA downstream 185632 12326097 ~ 12332753 (+) True AMCG00011143
AMCG00011145 mRNA downstream 194612 12335077 ~ 12345218 (+) True AMCG00011145
TU130727 other upstream 114 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 223362 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 256755 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 396111 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1248028 10818688 ~ 10819423 (+) True G104273
TU130924 other downstream 384895 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 469664 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 801915 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2479225 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 3180315 15320780 ~ 15322425 (+) False AMCG00011241

Expression Profile