RNA id: AMCG00011149


Basic Information

Item Value
RNA id AMCG00011149
length 1581
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00011149
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12300785 ~ 12306207 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCGACGGGCAGCTGAGCCCTCGTATCCCGTGCCGGCTCTGGGCTTCCCGCTGGCTGGGGGCCAGGGCTGGAAGGCGGGTGGGGAGGTGAAAGGTCAAAGGCAGCGGGCACAGGGGGAgttggaggggtggggggtgatggGGTCACCACAGCAATGGGGTTCACTAACGTTTCCTGGGCTGTGCAGTGTGGGAGTGCAGACCTCCCCTGGCCTCAGACCTCCCCCCAATACACAACACCCCACACCATCAGCCAATCACATCGCACCGGGGGACTGTGGTCGTAGGCTCTCTGCTGATGTCAGAGAGGGCTTGTCATTGGTTGACATAAGGGACGTGACCCACTGTGACTTCAAGAGGGGAGGAGCCTCTACTACCAAAGAGGGTGGGGCTTTGAAAGATATTGTTGAGGGATCAGTGGGTGGAGTCTACAGCACTGTTGGTGGGGGCTCCCAGCCACAAGGGGGCGGGGCTCCAGGTAAAGCAACACGTGGAGTGGCCTCTCTGGACAGAGCGAAGCGGAGCTCTAGGTACACCAATGGGAGTGTGGTTGGCCCGGAGATAGTGGGGGGAGTCTGTAGTGATGGCAATGGAGGGGCCCCAGGGACTCCAAAGAAAGATGGTGGATCTGAAGAGAGTCACAGTGCAGGGGGGCAGAAGAGGGCCGCTGAACGAGCAGCAGAGCCTCCCCCGCCATGCAGAAGCCCCTGCGCCCCACCCCCCCGAAGCTGCGCTCAGTGTGGCAGGAAGCAATCCCTGCCCCCCCCCTGTTTGGTGCTGCACTGCCGCAGAAGGGGGGGGCGTATGAGGAATGGTGCCTCCCCCATGTCCACcacctgcagcacacacagtgcTCCCCAAGACCAGAGCCCATCCCACCCCACTGCCACCCCACCACGAGAATCTGCCCCTCCTCGGAACACACACCAATCTAAACTGCCCTCGAGAGACCTCCACCACCCCAGCACTGCCCCTCCACACACAAACGAACACACCCACCCCATACAGGTAGTCCCCCCCAAAATGGATCATgcaccccccccactccccaagCAGAATGGCCTGACGGGGAAGCGTGTCCGGGGGGGGCAGAGGGGGCAGGGGGGTCTGCATGGGCGACTGCAGAGGGTGGAGGAGAGGCTGCTGTCCAATCAGGAGAAGATCAGGGTGCTGCTGAATGTGATCCAGGACCTGGAGAGGAACCAGGCTCTGAACCAGggACGCTGTTCATACCGGACTGGCCAGGACCTTAACAACTGCCCAACTTGCCAGAAAACAGCCTGCATCATCTACAgtgTGGAGCATGATTTCAGGCAGCAGGAAGGCCGGTTCCAGGGGGTGCTGCAGTGTCTGATGGGCGAGGCAGAGGGCCCCCTCAAACAACCTCCCCCCTCACCCTCACCACCGACGCCACCCCCCCCGCCAACCGCCCCCCATGGAGTCAAGAGCAAAGCCAAGAAACTACGCAGGAAGTGCTTCTGTCCCCACCAGCTCAGCCCCGCTGTGCTGCACCACAggcctgtctctgtccctgctAATGAGCTGGGAGGTctgactcagagagagagatggtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130789 lncRNA downstream 144054 12156442 ~ 12156731 (-) True G104598
TU130755 lncRNA downstream 156663 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA downstream 158770 12135968 ~ 12142015 (-) True G104591
TU130718 lncRNA downstream 261409 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 306446 11990829 ~ 11994339 (-) True AMCG00011140
TU130874 lncRNA upstream 68860 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 96157 12402364 ~ 12402564 (-) True G104665
TU130906 lncRNA upstream 123758 12429965 ~ 12493101 (-) True G104680
TU130932 lncRNA upstream 217630 12523837 ~ 12524358 (-) True G104697
TU131026 lncRNA upstream 454838 12761045 ~ 12763667 (-) True G104776
AMCG00011150 mRNA downstream 25236 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011136 mRNA downstream 215357 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011135 mRNA downstream 231710 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011139 mRNA downstream 241160 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011137 mRNA downstream 267386 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011151 mRNA upstream 82056 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 121786 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011159 mRNA upstream 191140 12497347 ~ 12499099 (-) True AMCG00011159
AMCG00011154 mRNA upstream 199607 12505814 ~ 12507945 (-) True AMCG00011154
AMCG00011157 mRNA upstream 204617 12510824 ~ 12527131 (-) True AMCG00011157
TU130749 other downstream 231706 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 302999 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2557000 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2698044 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 3064592 9234411 ~ 9236193 (-) False AMCG00011058
TU130831 other upstream 19890 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 129664 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 242082 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 328649 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 636184 12942391 ~ 12943082 (-) False AMCG00011174

Expression Profile