RNA id: AMCG00011154


Basic Information

Item Value
RNA id AMCG00011154
length 1113
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00011154
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12505814 ~ 12507945 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCGTTTGCGGACCCCCCTCAGGGCCTGTCTCCCCCCCGCTGCAGCCCCCAGTTCCCCAGCCTGGGCCAGGAGCCGCCCGAGCTGGGCCTGTACAGCGACAGCTATTACCACCCCCCTGGGCTGCCCAGCCCCCCCCGCGGGCCCCCTGCCCCCGCTCCCCCCTACGACCTGGGACCTGACTACAGTGCCGGCTCTGCCAACCCCTATCTGTGGTTCAACAGCCCTGGGCTCAGCGGCGCCCCCTACCTGCCAGGGGCCAACCCCTCTTCGCCCTTCATGCCCCAGCACTACGGGGTTCAGAGATCGTACCTGGGAGGGGGACCGGTGGCGGGGGGTAAGGGCAACTACTGGACTCTGGACCCCAACTGTGAGAAGATGTTCGACAACGGCAACTTCCGCCgtaagaggaagaggaagtctGACTGCGGCCCCAGCGAGGCGGGGACGGGGGTGGCGCTCAGCTCGGAGTCCAGGGAGAGCACAAATGGCAGCAGCAGTGGCGGGGGTGTGGCGgtggcaggaggaggagggggggagggtgGCAGCCCTAAGGCACCCAACTCCCTGCTTGACATGAGTGACCCCAGTATGACTCCTGAGAGAGgcccctccccttcccctggAGGCCCCTCCCCCTGCCTCAGCAGCTTCCTGTTGGGGATGAGCAGCGtagcgggaggaggaggaggaggaggagaaggcggagcaggagcaggaggggagGCCCTGAGCCGTGCGTTGTCCCTGGGGCTGACTGGAGAGGGGCCCCCTCGCACTGCCCTGACCCCCAGCGGCTACAGCCCCTACTCCCCCAGCCCCCTGTCCTCCCTGCCGGACTGGAATGCCCCCTTGCCGCCCCCACCACACCCCCCCCAGCACCTCCACCACCTCCACCCTGTTCACTCGCtttcctccacctcctccccccCGCcaccctcttcctcctcctccacctcttcctcctcctcctcattgGGCTACAGCAGCTCCCTGCTCAGTCAGTTCAGCAGCCACTTCTACCCCAGCCTGGGGGGGAGCAGCAGCGGAGGGGGAGTTGGCCTGGGCACGGGGAGCCTGCTGTACCCACGCGAGGGCACCGAGGtgtag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130906 lncRNA downstream 12713 12429965 ~ 12493101 (-) True G104680
TU130881 lncRNA downstream 103250 12402364 ~ 12402564 (-) True G104665
TU130874 lncRNA downstream 126147 12375067 ~ 12379667 (-) True G104660
TU130789 lncRNA downstream 349083 12156442 ~ 12156731 (-) True G104598
TU130781 lncRNA downstream 363799 12135968 ~ 12142015 (-) True G104591
TU130932 lncRNA upstream 15892 12523837 ~ 12524358 (-) True G104697
TU131026 lncRNA upstream 253100 12761045 ~ 12763667 (-) True G104776
TU131049 lncRNA upstream 313128 12821073 ~ 12825491 (-) False AMCG00011169
TU131116 lncRNA upstream 420727 12928672 ~ 12931083 (-) True G104845
TU131117 lncRNA upstream 427537 12935482 ~ 12940160 (-) True G104846
AMCG00011159 mRNA downstream 6715 12497347 ~ 12499099 (-) True AMCG00011159
AMCG00011152 mRNA downstream 65954 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011151 mRNA downstream 103744 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011149 mRNA downstream 199607 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011150 mRNA downstream 230265 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011157 mRNA upstream 2879 12510824 ~ 12527131 (-) True AMCG00011157
AMCG00011156 mRNA upstream 21885 12529830 ~ 12541377 (-) True AMCG00011156
AMCG00011155 mRNA upstream 43263 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011166 mRNA upstream 74160 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011167 mRNA upstream 88189 12596134 ~ 12605644 (-) True AMCG00011167
TU130897 other downstream 48487 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 177532 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 436735 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 508028 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2762029 9741133 ~ 9743785 (-) True AMCG00011086
TU130955 other upstream 40344 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 126911 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 434446 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 435196 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 857138 13365083 ~ 13367074 (-) True G104909

Expression Profile