RNA id: AMCG00011156


Basic Information

Item Value
RNA id AMCG00011156
length 1967
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00011156
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12529830 ~ 12541377 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCTGGTTGAACACAAGCTGCTTGCTCTGGGCCCCACGGAGCCGTGGTCAGTGAAGGAGAAGTTGTGCCTGGCTTCTTCAGTCATGCGCAGTGGAGACCAGAACTGggtgtcGGTCAGTCGTGCCATCAAGCCATTTTCAGAGCCAGGCCGCCCCCCTGACTGGTTCTCCCAGAAGcactgtGCCTCTCAGTACTCAGAGCTGCTGGAGACAACAGAGACACCAAAgCGTAAGCGCGGGGAGAAGGGCGAGGTGGTGGAGACGGTGGAGGACttgaagaaagagTCGGAGTTGATCCAGGCTGGACATCTGGACAGTAAATTGGAAGAGCTGTGGAATGATGCCCTACTGAAAAAGAAgcaagaagaggaagaggcGGAGCTAAAGAGGAAGGCCACAGATGCGGCCTATCAGGcACGGCAGGCACTGAGGAATACCCCCAAGCGTGTGCCCAGTGTGACGGCCCCTGCTCCTACAGTGTTCCTGCCTCTGTCTGAGGGGCCTGGGCCCAGCCCCCTGGAGCCCAGCCTGGGGACTCTCCTGGACGACTCCCCCCAGAAGAAGCTCCTGGGTCAAAAGGCTACTCCGCCACCCTCCCCCCTGCTCTCTGAGCTTCTGAAGAAAGGGAGCCTGCTGCCCACCAGCCCCAGACTGGTGGGGGAGGGAGACGTGCCGGCGGGGCACATGGCTGGCGCACATGGGGCTGGCCCCACCCACTTTGCCGCTCCCCTCGGCCCCGCCCTATCTGCCAGCACTGAGCCCCCTGCTGCCGCCACTGCTGCGCCAACGCTGGCCCCCACGGACGCCCCCCGCCGCGCTGACACCCCCGAGACTCACAACACAGgtgtggaCCCAGGTGCAAGTGCCCCAGGGCTGGGCAGTGCAGCCCCAACAGAGGTGAAGGGGGAgttgggggaggaggaggagctggtggCGGTGTCTTATATTGGGGACGAGCTGGACCTGGAGACTGTGGGGGACATCATTGCCATCATTGAGGAGAAGgTGGATGACAACGCGGAGGCCCTGGACGCAGCGGCCGTGGAGGCAGCTCTGTCCCTGTGTGAGGAAGCCACTGACCCCCACTCCCTGTCCGGCCCCTGGGAGCCCACCTCGTTCAAGCCCCCGGACACAGCCACAGCTCCCCCTCCTGGCCCTCCCGTGCACTGCAGTCTGGAAGTCAAGCAGGAGCAGCCCGAGGAGGAGCAGGCAGGGGCGAGGGAAGGGGCTGCAGCGCGGGAGCTAGGaactgcctcctcctcctcctcctcctctgctgcCCTGCCTGCTCCTGTCTCCAGGGACACAGCAGCCACACCCAGTAACCAACCCCCTGCCCCGTCCCTCCCTCCACACCCCCCTGTTGCCGGGAGTCACACGGCGCGCCCCACAACCCTGCACACCACCGCCGACTCCATCCCCAGCAGCCCCGCCTCCTCACAGTTgACGGAGGCACCAGGGGCAGGAGGTGCGCCATCGAAGCTGACATGAAGATGAAGAAATGAGAGCGAAACATGATCAAAGGCAGGATGGAGAGAGCCAGAGATGGACCGTTCCAAAAGACAGCCCTTCACACTCGGCATGCGTGCGAGTGTGTGTCCCGTTCACAGTGAATGTGACAGACTGTCAGTGCTGGAGGGGTCTGCTGTGAATGCAGTCCCGCTGCAGAAGTGTCCATTGTAAACTTGGCGGGAGGGGGCTGTGCTTGGCTATGTGTGACTGTAGGTTACAGTTATGGACAAAACTGCAATAATGTCATGACAGTCTccgtgtctcagtgtgtgagtCCAGTGCTGGTGTGTACAGTGTCAGTCTCAATGTTCTGTTGTgtgttcattttcctttttttgtgcttcatattaaatgtttaataaagaactaaattaaaacactgaaatgagtATGGAGtcctgtgtttatgtgtgtgagagagaggtggagagggaAAGAGTTGATGGAGTGTG

Function

GO: NA

KEGG:

id description
K11321 BRD8; bromodomain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130932 lncRNA downstream 5472 12523837 ~ 12524358 (-) True G104697
TU130906 lncRNA downstream 36729 12429965 ~ 12493101 (-) True G104680
TU130881 lncRNA downstream 127266 12402364 ~ 12402564 (-) True G104665
TU130874 lncRNA downstream 150163 12375067 ~ 12379667 (-) True G104660
TU130789 lncRNA downstream 373099 12156442 ~ 12156731 (-) True G104598
TU131026 lncRNA upstream 219668 12761045 ~ 12763667 (-) True G104776
TU131049 lncRNA upstream 279696 12821073 ~ 12825491 (-) False AMCG00011169
TU131116 lncRNA upstream 387295 12928672 ~ 12931083 (-) True G104845
TU131117 lncRNA upstream 394105 12935482 ~ 12940160 (-) True G104846
TU131208 lncRNA upstream 834756 13376133 ~ 13376997 (-) True G104915
AMCG00011157 mRNA downstream 2699 12510824 ~ 12527131 (-) True AMCG00011157
AMCG00011154 mRNA downstream 21885 12505814 ~ 12507945 (-) True AMCG00011154
AMCG00011159 mRNA downstream 30731 12497347 ~ 12499099 (-) True AMCG00011159
AMCG00011152 mRNA downstream 89970 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011151 mRNA downstream 127760 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011155 mRNA upstream 9831 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011166 mRNA upstream 40728 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011167 mRNA upstream 54757 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011170 mRNA upstream 274050 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011169 mRNA upstream 279648 12821025 ~ 12826880 (-) True AMCG00011169
TU130897 other downstream 72503 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 201548 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 460751 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 532044 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2786045 9741133 ~ 9743785 (-) True AMCG00011086
TU130955 other upstream 6912 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 93479 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 401014 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 401764 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 823706 13365083 ~ 13367074 (-) True G104909

Expression Profile