RNA id: AMCG00011157


Basic Information

Item Value
RNA id AMCG00011157
length 800
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00011157
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12510824 ~ 12527131 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTTGGTAAAGACAGGAAAAAGCTAATCTATGTATTATGTGTCTATGGTTTTAAATAACAGACCGGAAGCGGATGAGGAAGTGACGCTGATTGCGACCCTGCAGGCAGTAACACGTGTTTCGGCAGGGTATATCTAGGCAGTGTGCGCGGTCTCcctgtgtgaaataaatatacaaccGAACTACTAAACAGATTGATAATTAAACCAGTGTGGAAAGGATGACCAAGGTGAAGAaggaggcggcggcggcggcggcggcggcggagTCGGTGCccgaggaggagaaggagagcgGCGGCACGGGCAAGAGCTACGGGGAGCTGGTCGCCAACGTTAACCCCATCGCGCAGCCGCTGGCCTCCCGGAAACTGACCAAGAAACTGTACAAGTGCGTCAAGAAAGCCTCCAAACTGAAGCAGATTCGCAGAGGAGTGAAGGAGGTGCAGAAATTCATTAACAAAGGAGAGAaaggGATTGTGGTGCTGGCGGGAGACACTCTGCCTATCGATGTGTACTGCCATCTGCCAGTGATGTGTGAGGACAGGAGCCTCCCCTACGCCTACATCCCCTCCAAAGTGGACCTGGGTCTGTCTGCCGGTTCCAAGCGGCCCACCTGTGTGATCATGGTGAAGCCGCACTCCGAGTACCAGGAGGCATACGATGAGTGTGTGGAGGAGgtcttcctctcctctcctctgggGTTGGGGTCGTGTGTGACCTTGCTCTGCGTGTGGATTTGGAACGGGGGGGAATGGGGGCAGCTTGTGATCacgtttTCCCTTTTCTTGGATAACTGA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130906 lncRNA downstream 17723 12429965 ~ 12493101 (-) True G104680
TU130881 lncRNA downstream 108260 12402364 ~ 12402564 (-) True G104665
TU130874 lncRNA downstream 131157 12375067 ~ 12379667 (-) True G104660
TU130789 lncRNA downstream 354093 12156442 ~ 12156731 (-) True G104598
TU130781 lncRNA downstream 368809 12135968 ~ 12142015 (-) True G104591
TU131026 lncRNA upstream 233914 12761045 ~ 12763667 (-) True G104776
TU131049 lncRNA upstream 293942 12821073 ~ 12825491 (-) False AMCG00011169
TU131116 lncRNA upstream 401541 12928672 ~ 12931083 (-) True G104845
TU131117 lncRNA upstream 408351 12935482 ~ 12940160 (-) True G104846
TU131208 lncRNA upstream 849002 13376133 ~ 13376997 (-) True G104915
AMCG00011154 mRNA downstream 2879 12505814 ~ 12507945 (-) True AMCG00011154
AMCG00011159 mRNA downstream 11725 12497347 ~ 12499099 (-) True AMCG00011159
AMCG00011152 mRNA downstream 70964 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011151 mRNA downstream 108754 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011149 mRNA downstream 204617 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011156 mRNA upstream 2699 12529830 ~ 12541377 (-) True AMCG00011156
AMCG00011155 mRNA upstream 24077 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011166 mRNA upstream 54974 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011167 mRNA upstream 69003 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011170 mRNA upstream 288296 12815427 ~ 12819344 (-) True AMCG00011170
TU130897 other downstream 53497 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 182542 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 441745 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 513038 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2767039 9741133 ~ 9743785 (-) True AMCG00011086
TU130955 other upstream 21158 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 107725 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 415260 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 416010 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 837952 13365083 ~ 13367074 (-) True G104909

Expression Profile