RNA id: TU131118


Basic Information

Item Value
RNA id TU131118
length 1001
RNA type TUCP
GC content 0.63
exon number 1
gene id AMCG00011174
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12942390 ~ 12956267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAGGGTAGAGGAGAGGGGCCGGGCACCCGAGGGTGGACCACGGCGGCAGGGGGCCGTGGTGCGAGTCTCTGCTGTGGCTCATACTAAAAGCGGGGGAGGCGGCGGCAACAACAACAGAGGGATAGTCAAGGTTCCCCCGTCCTCAGGCCCTTCACCGGCGCACGGCGGGGCCCGCGCACAGCTGAGCACCAAGAAGGTCCTGCAGAGCAAGAATGTGGACCACTCCAAGGTGCGCGAGGTGCTTAAGATGGCCAGAGCACAGAAGAGGCAGCGGGAGACCAGTGGCAGGAGCATCACGGCCACTTCCAAGATGACCGCGAcagcggcggcagcagcagcagcctccaCCCATCAAGACGCCCTTCCCAAAGTCCACTTTACCCGACGACTGCACCAGATCAGCGGTGGAGGAGGGGCAGGTAACtccacccccctccctcccaggATTCGGCTGAAGCCCCAAAGGTACCGTAATGAGGAGAACGACTCCTCTTCCTGTAAGCCAGGGCTGGAGAAAGTGACAGGCTGTGGCGGTGGCGGGGGCTGTAGAGGGGTCCCCAAGACCACCCCACCACGTTGCCCCTCCACTCGCTcttcctccatctcctcctcctcttcctgttcCTCCTGTTTCGTCCATGCAGGTGGCGAGGCCAGCACTGCTTCCGAAAGCCAGGGTCCGGCTCGAGGGCCTGACTCCGACTCCGAATCCGAACCCAAACCTAAAACAGAACCCGAGTCGCAAACGCAAACCCATCCCCAACAACAGCCCCAGCCCCAACCCTGTCTAGAACTACCATTGCGGCAAAATCCACAACCGGAACACCGAACCGAGCCCGATACGCAGCCACAACCCGAACCCGAGCACAAACCCCAGCCCGAACCCCGGCCGTATTCCGAGGCTCAGCCTGAAGTGGTCAAGGAGAGCATGGGGGTTGTAGAAGTCCCAGAGGAGCGagtgctggtggtggtgggcgggggagggggagatggagatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 2981 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 12058 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 117650 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 179474 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 418783 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 431992 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 433916 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 609299 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 718045 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 721654 13665795 ~ 13679262 (-) False G104929
AMCG00011169 mRNA downstream 116261 12821025 ~ 12826880 (-) True AMCG00011169
AMCG00011170 mRNA downstream 123797 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011167 mRNA downstream 337497 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011166 mRNA downstream 347728 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011155 mRNA downstream 386498 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011173 mRNA upstream 22396 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011175 mRNA upstream 41244 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011178 mRNA upstream 44508 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011180 mRNA upstream 60397 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011179 mRNA upstream 75765 13019906 ~ 13034119 (-) True AMCG00011179
TU131119 other downstream 59 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 302914 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 394148 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 485814 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 614859 12326097 ~ 12328282 (-) True G104629
TU131202 other upstream 420942 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 731990 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 1052059 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 1123074 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 2426261 15370402 ~ 15373179 (-) True G105290

Expression Profile