RNA id: TU131119


Basic Information

Item Value
RNA id TU131119
length 692
RNA type TUCP
GC content 0.61
exon number 1
gene id AMCG00011174
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12942390 ~ 12956267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGGGGCAAGGCGGGGAACCTCACGGTGTTCATGTCCCTGAACCAGCAGAGCAAGGCGGACTCGTGCTCGGGCTCCTCCGTGTGCAGCGTGGATAGCGCCGACGACCTCAAGTCCACCAACTCCGAGTGCAGCTCCACTGAAACCCTCGACTTCCCCCCGCCCGGTGTTTTGCACACCTCTGCCACCCCCCCTGACCCcagcacctcctcctcctcctcctcctctctcaccccCAACAAcgtctcctcttcctcctcctcctcttcatcctccACCATGGCCGCCTCTTCCAAGGATGATAAAAAGCTCAGTAAATCGCTCAAGGGTACCGTCTTTTCCAAAAACGTCTCCAAGTGCGTGACCCCGGACGGCAGGACCATATGCGTAGGGGACATTGTTTGGGCCAAGATTTATGGCTTCCCCTGGTGGCCGGCCCGCATTCTGGCCATCACAGTCAGCCGGAAGGACAGCGGGCTCTTGGTCCGACAGGAAGCGCGCATCTCCTGGTTCGGCTCGCCCACCACGTCCTTCCTGGCCCTGTCGCAGCTCTCACCCTTCCTTGAGAACTTCCAGTCGCGCTTTAACAAGAAGAGGAAAGGGCTCTACCGCAAAGCCATCACCGAGGCCGCCAAGGCCGCCAAGCAGCTCACGCCAGAGGTGCGCGCCCTGCTGACTCAGTTTGAGACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 2231 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 11308 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 116900 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 178724 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 418033 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 433051 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 434975 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 610358 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 719104 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 722713 13665795 ~ 13679262 (-) False G104929
AMCG00011169 mRNA downstream 115511 12821025 ~ 12826880 (-) True AMCG00011169
AMCG00011170 mRNA downstream 123047 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011167 mRNA downstream 336747 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011166 mRNA downstream 346978 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011155 mRNA downstream 385748 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011173 mRNA upstream 23455 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011175 mRNA upstream 42303 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011178 mRNA upstream 45567 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011180 mRNA upstream 61456 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011179 mRNA upstream 76824 13019906 ~ 13034119 (-) True AMCG00011179
TU130995 other downstream 302164 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 393398 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 485064 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 614109 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 873312 12067465 ~ 12069079 (-) False AMCG00011135
TU131118 other upstream 59 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 422001 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 733049 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 1053118 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 1124133 14067215 ~ 14068561 (-) True G105050

Expression Profile