RNA id: AMCG00011179


Basic Information

Item Value
RNA id AMCG00011179
length 3463
RNA type mRNA
GC content 0.55
exon number 18
gene id AMCG00011179
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13019906 ~ 13034119 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCGATCTCTCTTGCCCACAGCGATGGAGCAGCTGGTGGCAGAGCTCAGTGTGCTGCTGAAGCTCCTGGACCACGAGACCCTGAGCTCCACCACGGCCGAGAAGAAGACCGCTGTCAGGAACCTGCTGAGACAGCTGCAGCCCTCTGCAGTTAATGGTGGTGATGAGGTGTACATGAACACCTCCGTCTATGGAAATGGCACCAGCTTTGTGGAGTCCCTATTCGAAGAGTTCGCAGACTGTGACCTGCGGGAGCTGAAAGATGGTGGAGAGGAGCCAAGGGAGGAGTGCGAGGAGGACGCCCCAGAGACCAGCGCTTCAAAAGCAGATTACTACGAAGAGGCCGTGCCCCTGAGCCCAGGCAAGGCCCCCCAGTACATCACCACACGCAGCAGCTCCAGCCCCCCCAACTCCATCGAGGACGGATACTACGAGGACGCCGACAACAACTACCCCATCACCAGGATGAATGGAGAGCCCAAGAACTCTTacAATGACTCTGATGCGATGAGCAGCTCCTACGAGTCCTACGACGAGGAGGACGAAGAGGGCAAGGCCCGTCGTCTGACACACCAGTGGCCATCGGAGGAGAACTCCATGGGCCTGGTGAAGGACTGCCGCATCTGTGCCTTCCTGCTCCGCAAGAAGCGCTTTGGCCAGTGGGCCAAACAGCTAACCATCATCCGGGAGAACCGCCTCCTGTGCTACAAGAGCTCCAAGGACCACACCCCTTACATGGACGTCCTCTTGCACCTGTGTAGTGTCGTCTACGTCCCCAAAGATGGCCGCCGCAAGAAACACGAGCTGCGCTTTTCCCTGCCAGCAGGGGAGTCCTTGGTGCTGGCGGTGCAGAGCAAGGAGCAGGCTGAGGGCTGGCTCAAGGTTATCAGAGAGGTCAGCAGCCAGTCAACCAGGGGGTCAGCAGTGGAGGGATCAGTCTCCCCCAACATCCTGAGGAAAACCGAGCTGGACAAGAGACTGTCAGCCGACAAACACACATCTGACTCGGATAGCGTTGTCACGGGGGACAACAGCAGCCCAGTCAACAGCAAGGAGCATGGGAAGGTGAAACGTGGCGCCCTGTCGGAACTGACAGGCTCAGTGAGCCGGGCAGCTGGTCGCAAGATCACACGTATCATCAGTTTCTCCAAGAGGAAGCCCCCCGCAGCTGGGGAGCCCAGCGGCCCATCTCCCGAGGATCTGCCCCGCTGCGGTTACCTCAGTGTGCTGGTGAGTCAGTGCTGGAAGGAGCGGTGGTGCATTGTGCGTGGTGGCACCCTGTTCCTGCACCGCGACCGTTCGGACCTGCGCACGCCAGTCAATGCCATCGCACTGCGAGGGTGCGAGGTGGTGCCCGGCCTGGGCCCCAAACACCCCTTTGCCTTCCGGCTCCTGCGCAATGCCACAGAGGTGGCAGCCCTGGAGTCTCTGCACTACGACTATGTGGATGTGGACACCATCGCCAACATTGTGGACGCCGTCAGACACTCCTTCCTGTGGGCAACCGGTGCCAGCAGCTCCCCCGCCGACTGCAGGACCTACGACGAGGTGCCCTACGAGAGAGTGCAGCCTGAGGAATCCAAGCCGGGAGCCGCAGTGAAGAGACACGCCTCTTTCAACAGCAGAGATGCCCAGAAGATCGAGTCCCAAATCAAGATCAAGCGCCACGGCTCCAggatcCGCACCCAGCTGCTGGCGCTGCGCAGACAGAGGAAGGAGCTGAAGGAGGAGCTGAAGACAGCCTCAGGCAAGAAAGCGAAGGGGCTGGAGGAGAGGCTGGCCGGCCTGGAGGAGCGCTGCCGGGAGAAGGAGGGTGCGCGGGTGGACCTAGAACTGCGGCTGACGGATGCCCAGAGCAACAGGATCGAGAGTAACGGCACAGATCACAGTATGCCTGTCAACTGCGCCTCTGAGATGCGCAAACGTCCCCCTTCCATCTACGCCTCGGGCCGCGGGAACGTCATGCAGAAAGCCAAGGAATGGGAGTCCAAGAGAGGGACCTAGGTGAGATGTTGCTCTGCGAGAGGGGTCGGCAGTGTGTCGCTGGGCTGTGATGATGGGAGGCTGCAGACagaccagacagacagacagacaggctgaccatctccctctcctcagGCCTAccgagttttttttttcctgggctGGACTAAAGCCAAGAGAGGCTCAGAACTACTCcagctaaaacaaatatttttcttataacATTAAGTCTCTGCTAAGACACAAAAACAGCCGTGAGCGAGGGCCTGGGTGAGGAGGCACAGCCTCGAGGAACACTGTACAGCACCAGTATTTATTGCACAGGCACAACTAGTGCTGCTGGGATGGCCACCCTGTTGACATCTTCAAGAACAATTCACTGTTTCTGCGTACCTGCTTCAATTGATAATAATAGAATGGATGGCAATGGTAGGAATGGTATCCCAGCAGCACCTCTCACTTCTGCTCAGAGTAGTATGTGGCCCTCCAGACGACCTTTTACTACAGCGGCCCCCGGACAAGCAAGAGCgcacagatggagagagacggagacagagagagagagttcatcGAGTTTTGGAACCAACAGGACAGACTGACGGGCCGATCGCCACACTGAAAGCTGAAGTCCTGCTCCGACAGAGGACTAACTGGATGTCGATGTAGACTACAGGACTGGTTGAGAaggggattgtgtgtgtgggcgtgtgcatgtgtgcacaCAGGAAAGGTGTAGTTTGACAAATGTACCAAAGGGAACAGAggagaaaagaagaaggaaCAGGTATCAAGGGACAAtaaggagagaagaaaaacaagacaatcagtgtttaaaaataatttaatttgtactttATATACCAATAAcaccataaaaacacaacacaaagttttgttaatatattttggttttgggTCTTTAGGTTTATACTTACACTGCAGTTTGTACCCCTTACAATGTCCAGAAACATAGTGTTTAAAAATTAACACATTCGAGGCATTGCGACGCAGCTGAATTTCTgccagaaaaagaagaaaggcaGTGCAGTGTTTCAGCAGTATGGGGCTCACAGTGGGCAAAATGCCTCCGTTATGGTCACCTGCTCCTCTCTGAGCTCCGTGGAGATTTCACAGCCCTCTCCTGTATAAAGGCACCCGTCTGTGGGCGTAGCGGGTGTGTCGCTCTGCTGGTGAGGCCATGTGGGTGATGTCACGCTGCCTCTGCTCCTGGGATAGGTGCTCACACACTCACGGCAAAGTCACACAATCCACGAGAGGAAGTTGAGGGACTAGACAACGTCACGCACAACGCATTCATTATTCcatgcttgtgtttgtttgttcattcattgtCACAAAGTAACGTGGAAGTGTGACCTTCATGATAGGAGAGACACGGACTCATTTTGCAGCACAAAAACGcagtctctttttcttttatttgggAACAGAAAAGTAATACAGCTGCATTGAggtc

Function

GO: NA

KEGG:

id description
K23782 AFAP1L; actin filament associated protein 1-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 79746 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 88823 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 194415 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 256239 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 495548 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 342014 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 343938 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 519321 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 628067 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 631676 13665795 ~ 13679262 (-) False G104929
AMCG00011180 mRNA downstream 6555 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011178 mRNA downstream 20618 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011175 mRNA downstream 33325 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011173 mRNA downstream 35710 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011174 mRNA downstream 63639 12942390 ~ 12956267 (-) True AMCG00011174
AMCG00011182 mRNA upstream 22614 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011183 mRNA upstream 152829 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011188 mRNA upstream 294374 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011194 mRNA upstream 650515 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011200 mRNA upstream 709799 13743918 ~ 13745225 (-) True AMCG00011200
TU131118 other downstream 75765 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 76824 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 379679 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 470913 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 562579 12435871 ~ 12457327 (-) True AMCG00011152
TU131202 other upstream 330964 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 642012 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 962081 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 1033096 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 2336283 15370402 ~ 15373179 (-) True G105290

Expression Profile