RNA id: AMCG00011180


Basic Information

Item Value
RNA id AMCG00011180
length 864
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00011180
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13004538 ~ 13013351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCACCCGCAGTGTGGGCGCGCGGCTGCCATTCCGTCCGCGCGGCGCTTCACGTCCGCCGGCTCGTGCGCTGCAGACCTGCGGGGGCGAAGGGGTTAATCACGCTGTTCAACCCGACACAGAGCTGGGCCGGGAGGACGTCGTACTGCTCCAGAGTGGTTTGCAACTTGGGGAGTTTGCGCTGCTGAGGGGATCAGTGTGTCTATACAGCGCGGCAGCCCACCACCGCAGCACAGGGGACGAGTGCCATGTAGACGAGCCAGCAGATGAGCCGAGCCACGTGATGACCATTAGGATGCTGGAACTCAGGGCCAGCAAACTGGAGGAGCAAGTTCAAGACCTCACTGAGAGGTACAAGAGAGCTGTAGCAGATTCTGACACGGTGCGCAGAAGAACACAGAAGTTTGTTGAGGATGCCAAGGTGTTCGGCATCCAGAGTTTCTGCCGGGACCTGGTAGAGGTGGCTGACATCCTGGAACGCACAGCGGGCGATGTGGAGTCAGAGTTCAGGGGTCAGGAGACCCAGAGAAGGCGAGCGGAGGGGGCGGCAGCAGGAGTGGCAGACCTGGAAGGGCAGGAAGGGGGCGAGGGGAGCCCGCCTCTGCACCGGCTCAGTGAGGGGCTGGCGCTGGTTCAGGAGCGGCTGCAGGCCGTGTTTACCAAGCATGGGCTGGAGAAGATGGCACCGGTTGGGGGGCGGTACGACCCCTACCAGCACGAGATAGTCTGTCACGTGGCGGCGGAGGAGGGGGGTGCGCAGCCGGGCACCATCGCGCTGGTCAGGCAGGACGGGTACAAGCTACACGGCCGCACCATCCGGCATGCGCACGTGGGGGTCGCTGTAGAGGCACAGGAGGACTGA

Function

GO: NA

KEGG:

id description
K03687 GRPE; molecular chaperone GrpE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 64378 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 73455 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 179047 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 240871 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 480180 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 362782 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 364706 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 540089 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 648835 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 652444 13665795 ~ 13679262 (-) False G104929
AMCG00011178 mRNA downstream 5250 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011175 mRNA downstream 17957 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011173 mRNA downstream 20342 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011174 mRNA downstream 48271 12942390 ~ 12956267 (-) True AMCG00011174
AMCG00011169 mRNA downstream 177658 12821025 ~ 12826880 (-) True AMCG00011169
AMCG00011179 mRNA upstream 6555 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011182 mRNA upstream 43382 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011183 mRNA upstream 173597 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011188 mRNA upstream 315142 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011194 mRNA upstream 671283 13684634 ~ 13687704 (-) True AMCG00011194
TU131118 other downstream 60397 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 61456 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 364311 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 455545 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 547211 12435871 ~ 12457327 (-) True AMCG00011152
TU131202 other upstream 351732 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 662780 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 982849 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 1053864 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 2357051 15370402 ~ 15373179 (-) True G105290

Expression Profile