RNA id: AMCG00011182


Basic Information

Item Value
RNA id AMCG00011182
length 2458
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00011182
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13056733 ~ 13104555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCAGCGAACTGTAGGAGAATACACGGAGGGGCAGAGCAAgattaGTTCACTGGCAGCGATGCAAATTAATACATCTTGCGTTCTAGtgtgcgGCTGTGACTTGGCCCGATCGGGCTTCTTCCAGAAGAATGGGGAGTACATCTGCACTTCGGACTACCAGCGCCTGTATGGCACCAAGTGTGACAGCTGTGGGGATTTCATCACCGGGGAGGTGGTCTCCGCCCTGGGCCGCACCTACCACCCCAAGTGCTTTGTCTGCAGCGTGTGCAGGAAGCCGTTCCCCATCGGTGACAGAGTGACGTTCAGCGGGAAGGACTGCGTCTGTCAGCAGTGTTCCCACACCCTGGTCAACACCAATGAGCCCATAAAGATCCATGGGCCCAGTCCCCTGGAGAAGCAGTGGCATGTCAGCTGTTTTAAGTGCCAGACCTGTGGGATCGTGTTGACAGGGGAGTACATCAGCAAGCCGGAGGGAAACACTACCACCCGACCTGTGCGCGCTGTGCCCGGCTCGGAGGTGTGGCACCCCCTGTGTAAGCAAGCTGCCCGGGCGGAGAGGAAGCTGAAGGCCAAAGTGGACAATGAGATCCTAAATTACAAAGATTTCGCTGCCCTCCCTAAGGTTAAAGCTATATATGATGTTCAGCGGCCTGATCTCATGTCCTACGAGCCCTGTCACAGATACTCCTCTGATGACAGGCTTGAGAGGTTCAGCTATGGGGAGGACATCTACGACAGCATCGACCTGCGCCACAGGCGGGCCTCCAGTCCGGGATACATCGACTCTCCCAGCTACAGTCGTCAGGGCATGTCTCCGACTGTGCCTCGCTCCCCGCAGCACTACTATCGCTCTGGCACGGAAAGTGGCAGAAGTTCTCCTTATTACAGTCAGCTCGATGTCAGAGCCGCCACGCCCACTGCGTACCAGGCTCCCAAGCATTTCCATGTTCCAGCCACAGGAGAATCAAACATCTACAGGAAACCGCCCATCTATAAGAGACATGACAATCATCGCTACACAGCCACCAAGAGCAAGACGAGTGAGGACATAGTTCACTCTACCAGCACACTGAGACCGATTACTACCAGTACCATGGCTCGCCTAAAGATCCAGGGTGGAATCGGACGCATGATCCTGAAGGAGGAGATGAAGGCGCGCTCCGGTTCCTATGACAACGACCCCTGGGCCAGCGCGCGGCACTCTCGCAGCGGCAGCAAAGAGACTCTGCACAGCATGGGCTACGAAGCCTCCATGAACGGCTctcctCGGTCACACTACACTGTGGACAGCGACTCCTTCATTTCCAAGTCTGCCTCCCTGCCAGGCTACGGGAGAAACGGCCTGCACAGGCCGCAGAGTGCAGACTACTTCCAGTACGACAGCAGCAATGCAATCTATCCCTATGAAACTCTAATAGTGACCACCAGGGGGCGGAATCGGCTGCCAAAAGACGTAGACAGAGCCAGGTTGGAGCGCCATTTATCCCCTGAGGAGTTCTACCAGGTTTTTGGGATGAGCATCGCCGAGTTTGACCGGTTAGCTCTCTGGAAGAGGAACGAGCTGAAGAAGCAGGCCAGGCTCTTCTgatcggagagagagagagagaaagagagggagaggaagaaagagagcgagagtgaCCATGTACTCCAGCCAAAGGGAGCAGACATGCTGCATCTGCGAGAGACCTTGAGCAGAGCTTGCGCTGGGGGCGGGGGGACAACTAAATGCTCCCTTTGCAATTGtattcagctttttattttgataatgttttactctgtatgtatttatttttcttttgttccacAAGATGACTGTGGCGTGTCTAATTACATTACCAGTTGTGTTAAGAAGTCATTAGACACAGGTGGGGCTTTGCCTTATTAAGCTGTACAGATTACAGCGTGACTCGAATGTTGGTATCATATCTGCCACTCCATGAGACTGTCGCGGTGTGGAAGAGCGGCGTCAGTTTCTTATATTGATTTACAcgtggaaaaatatattttacaccaTGTAATCCACTTGGGCATATCGTAAACGCATACCTTCAGCTTCATTTTGCATTCATCACATTAGTTTTAGCTTGTACTACTAAGGAGATGGGCATTAGATAGGTGTTGACGTGAGACGCTCCACTATGTGTTTCATATCCACACAGCGGCAGCAGGTGGAGTTTGTTTGGTGTGGAAGATGCTTTCATGAAGTGATGATGTAAACCAAAACAGGATGTAAAGAAATTAATGACGTATCAAAAAGCTATGGAGGCAGATGCTGCCGATCCCTCTCCCCTCCCATCCGCATTACCATGTTTAGGTTAAGCACTGAATGTTATTTCCCGGGGAAAAGGAATTCCCTCGAAAATCTATAGATGTTTTCAGGAATGTATTAAGAGTTGTTTTGATctatacataataatactactaataataatattaataataataataat

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K07520 ABLIM; actin-binding LIM protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 116573 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 125650 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 231242 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 293066 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 532375 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 271578 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 273502 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 448885 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 557631 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 561240 13665795 ~ 13679262 (-) False G104929
AMCG00011179 mRNA downstream 22614 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011180 mRNA downstream 43382 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011178 mRNA downstream 57445 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011175 mRNA downstream 70152 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011173 mRNA downstream 72537 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011183 mRNA upstream 82393 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011188 mRNA upstream 223938 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011194 mRNA upstream 580079 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011200 mRNA upstream 639363 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011198 mRNA upstream 647998 13752553 ~ 13778757 (-) True AMCG00011198
TU131118 other downstream 112592 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 113651 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 416506 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 507740 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 599406 12435871 ~ 12457327 (-) True AMCG00011152
TU131202 other upstream 260528 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 571576 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 891645 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 962660 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 2265847 15370402 ~ 15373179 (-) True G105290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_12636358_12646989.mRNA True 1277 mRNA 0.44 8 CI01000000 12636307 ~ 12647372 (-)