RNA id: AMCG00011183


Basic Information

Item Value
RNA id AMCG00011183
length 4914
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00011183
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13186948 ~ 13192140 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagcgagagagagagagagagagagggagagggagggaggttaGCAGAAAGGAGTGAGAGGCACAGCACTCATGGAAACTCTATCAGACTCAGATTCTATTTTCTaagactgaaggaaaaaaactcaTTTATGTGGGAAAACAGAAAGCAAGATCACACTGGGCTAAGATGGGTTCTGCCCACACACATGAAATGATCAATAACTCCAGCGCCTCCAACTCCAGCAGCCATGAGCCAGGTGATGTGCAGTCGGTGTTAACGGGGATCCTGATGTCCTTGCTGGTGCTGGGCATCGTGTTCGGCAACGTGCTCGTGATCACGGCCATCGCCAAGTTCCAGCGGCTGCAGACTGTCACCAATTGCTTCATCACGTCCCTGGCGTGTGCGGACCTGGTGATGGGGCTGATCGTTGTCCCGTTCGGGGCATACTACATCGTCATACAGACTTGGCACTTCGGAGACTTCTGGTGCAAGTTCTGGACAGCGACAGATGTCTTGTGCGTCACTGCCAGCATTGAGACCCTCTGTGTTATCGCGCTTGACCGTTACCTGGCCATCACCTCACCCTTCAGGTACCAGTCCCTACTCACCAAGTGCAAAGCCCGAATTGTGGTGATGGCTGTGTGGGTGGTGGCTGGTCTGATCTCCTTCTTGCCCATCTACAAAGATTGGTGGATCTCAAAAGAAGATGAAGCCAAGAAATGCATGGAAAACCCCAACTGCTGCGACTTCAACACCAGTACCGAGTATgccatcacctcctccatcaTCTCCTTCTACATCCCCCTGCTCATCATGGTGTTTGTCTACGCCAGGGTGTTTCAGGAGGCCAGGAAGCAGCTGAAGAAGATCAACAGGTGTGAGGGCCGCTTTCATAACCAGAACAATAacctgcagctgcagcagcagcaaccaCAGCAGGAGGGGAGCAACAGCGAGCTGAACGTTGGCCGAGGACCCCAGAAGAGGGCCTCTAAGTTCTGCCTGAAGGAACACAAAGCCTTAAAGACTCTGGGCATAATCATGGGCGTCTTCACCTTGTGCTGGCTGCCCTTCTTTGTGCTCAACGTGGTGGAGGCCATCATGAAAACCAAAGAACTGCACCAGCCATACAAGATTCTCAACTGGATAGGGTATGCCAACTCCGCCTTCAACCCTCTCATCTACTGCAGGAGCCCCGAGTTCAGGCATGCTTTCCAGGAGATCCTATTCATCAGGAGGTCGCCCTTCCCCAAATTGAGCAATGCAAATGGATATATTTACAGTGGGCACAGCTGGCAGCACGAGCAGCAGGCTCAGAGTAAATACAGTTCTGAGGACAGTAACAACCCCGAGGGGATTGTGGATTGTAAAAAAAACCTCCCTAACACTGACACTAACGGGAACTGCAACAAAGGTCTTACAACTATCATTTAACCAACTCACTGACTCccttaacaaacaaacaaacaaacaaacaatcagtCTTTTAAAAAGACTGACCTATCTGGGTAAGCAAACTATGggttaaatatttgtgtgttgttctatctttctttttgttaatttcataATTCACATAGATTGagattttctctttctttattattagtttgtgttcatgtgtgttttttgtttgttttgttttgtttttgtttttcactgtggTGTCTTTACAAGTCCATAGtctaaatatatgtgtgtgtgtgtgaggtggcagggtgggggtggggtgctTGTACGTGACAGTGTAGGTTCTGTTAAAGTTTGGAGGTCCACTTAGTTTTGGCCATTCTCAGTGGAAAATGGCTTTGGCGACATTTTCATTCCATCTACCTcataatgtttttagtttttttttcttaaataaatcagtggcattttttccttaatttctgtatgaagttattattattattattgttattatttttattatgacaaTACATGCCTAGTAGGTTCAATATTTGAAAGTCATCTTtccaccataaaataaaaaagctggtCTGAGCAGTCATACTGTTATCTTTTAGAATTACCTTTGATTGGTATTGTCCCCTTgtacaacagaaaataatacaatggtACGGGTAATATCATAGCTGTATAGTGATCATCAAACACACATTGTGAGAGCGACGAGTAACAGCACTATACAGTTTATGTATTGCTTCTTATCGAGCGTGCTGGACAGATTAGACGGGTCCACCTGGTGCACGAAGGCAGGAGTTTAAGGTTATTTATCAGACTGTCAGGCGTCAGCACTTGCGCAACTATCCACCATCTCTACTTCTGCAACAATTACATAATGAATGACAGTGTGGACATTGCATTAGTTAAACAAGACAATATCAGCCTATCAtgggaggaaagaaagaaagaaaatggaaaattaaagattaaacacTCGGCTCTTCAGTACTCTTCATTCAGCTCTGCACAAATCCGTGAATCTTTCAGACATTCCAGTTGCGTTTTGTGTAAAGCAGGCATTACAGCAGGCTGCTCTGCTCCAGCTGCTTCCATACCGTAATCTTACACTCGGATGAGAAATAACAGGTGCAAGCCACAGCTCGCTCACGGACGAGGTGCGCTTCAAAAACATTGGGCAATGCTCTGAAGTCAAACGCCTTGACTTTTTACATGGGTCAGAAATGTTTCAAGCCATTTGCTTTGAGGCTGCCATCTACAGGGCCAGTAAACAGTTGGTACAGTTAGCAGAATGGAGCactaatatataaaacaaacgaGGGTGAATGGATGCAGTTGGTTGTTATTGAGGCTAGCTTCTTGTATTTGCTGCAGATACATTGTGGATTGTCACACACTTAAACATGCACAGAACACTCTGACTGAAGTGTTAAAACACTGTAGGCATATTTGATTGCATCATGTCACTTCCCTGCTACTACACAACGTCGCCACAACATTGTAGCGACATATATAGAAATTTCTGTCAGTCAGATAGCTGTATCTATTTAATCgctgttgtgtttctgttttcctcAGTAAGCATTACTGTATGTTTTTACTAATACTTAAGTGACGTTCAGTCAGAGTTCCCTGAAATCTAGTGAAGTAAAAGTGagtaaatagaaataaaaactttttaacCCCCCCGTCTCTTGGCATCGACGTAGAATGACTTATGGTATTTACAATGAATGAATATACCCGTGTTTTGTTGTTGGCGTAATTGATTCCTTCTCTGTTGTCAAGCCGGCTTACTTTTCTAATAGTACGTAATAGtaagcaagcaaacaaagaaactgGTAAAGAAACACTTCCGAGCAGAAAATTGGACCAAGACGGAATTAGTAGTGATAATTAGTGACAGTGCTAAAAATCCAGGCCTGCATTTCAAATGGCAGGTGCATGCAGTGTGCACAACATCTAGGAGGGTCTTTTTCTACCATACCCACAGGACATTATACTTCTGGCAAGGTATGTGATTTTCCGTAATATAGCCTtaaagacaaattaagtaaCTGTATTAACTTTGTGCCTCCTCCCATCAGTGTTAGTGATTACTCCATTAATTACGCTTGGCTCTCTTTTGAATCTGACTTGATTATTTCCTTGATAAGTTGAAACCTTCACTCAAGtccattttacacacacacacacactatatatatggcactttatatatatatatatatatacagcactggaaaaaattcagagaccacttaacattgatttctgaacttggagtggtctcttaatttttttcaaagctatatatatatatgattcacGAAGATTTAATTTTCTGCTTCTCACTGGTACAACAATGCAACCAGTGCTACAATGTTTCCATGCagacacatattttaaacacaggAAGCATCATACCTTTCTCTACTGCAGgatttcttcatttaaatataaatacatacaatataaataaatacacactagGACAATGTATTCACCGCCTATTGATGTTTGTGTATGTACCAGTCAGAACATGTACAACGTGTCTAATGATCTATGTTGAATTGGTTTCTATGTACAACGATTGCCTTCAATGCACTTTCCCCTCCTTGTGAAGCATTTGTACACACTGCCTTCCGCTGGCTGCTTTTACAAACTGCACCTGTTTCTTCAGAGCCTCGCAGTCTCAGTACAGCGCTAACTCAGCAGTGTGGTGTTTgcttgtgcttttctttcatgttcCCGGTCTGCTTGTGGTCCTATGTGGGGGAATCCAATGTGTTTCCTGTGCACACTTCAAGAGATAGTGCCACTGTGTGCAATAACCCTGTGATGAACAAGCTGAGTCTGCATTCCTTACTGACGCTGAGACCCATTGCATTACATAACACCGAGTGAGTGCGAGTGAGTCAGGGTGTCGGGGCCACAGAGGGGAGAGGCCAATGGTCTAGGCAGGATTTCTCAAACTTTTTGGGTCCACGGACCACTCAGCCCGCCACTTCTGATGACAAAGTATATTGACttatagtaatacaaaattattcataGTACCAGAACATGAAGACtttaagaaaacacacacacacagagacacccaGAGAGATATGTTTCTTTAGGggagacatttaaatgttatcacattattatatataaccCTAAAACTACCACTGCACTTACTTCATGCTCTCTTCTGCCATCCTAATCTTAATGGGACACCACTGGTCTAAGGGATACTGACCTGGCTTGCTCATTGCACACCTTAATTGTCTGTAATTGCTTAAATAGGGTGAGGCACAGCTTTAATGTCACCCAAGTTGAatgtttactgtaattattaagCTACTGTTGCACAAAGGAGTGGCGTACTtgttactgtgtttttgtttaaaataaacatgaaaaaatatgtataaagtTCAATTGTAGAGTATATTtatcaaatgcaaatgtgacctgacatttgtgtttaaagaataaaaagtgCATTTAATGTA

Function

GO: NA

KEGG:

id description
K04142 ADRB2; adrenergic receptor beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 246788 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 255865 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 361457 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 423281 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 662590 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 183993 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 185917 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 361300 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 470046 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 473655 13665795 ~ 13679262 (-) False G104929
AMCG00011182 mRNA downstream 82393 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011179 mRNA downstream 152829 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011180 mRNA downstream 173597 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011178 mRNA downstream 187660 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011175 mRNA downstream 200367 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011188 mRNA upstream 136353 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011194 mRNA upstream 492494 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011200 mRNA upstream 551778 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011198 mRNA upstream 560413 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011203 mRNA upstream 664717 13856857 ~ 13858270 (-) True AMCG00011203
TU131118 other downstream 242807 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 243866 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 546721 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 637955 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 729621 12435871 ~ 12457327 (-) True AMCG00011152
TU131202 other upstream 172943 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 483991 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 804060 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 875075 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 2178262 15370402 ~ 15373179 (-) True G105290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000040_05129482_05130724.mRNA True 1981 mRNA 0.48 1 CI01000040 5128744 ~ 5130724 (-)
rainbow trout (Oncorhynchus mykiss) TU1411084 True 3433 lncRNA 0.48 2 NC_048578.1 30466479 ~ 30469933 (-)