RNA id: AMCG00011185


Basic Information

Item Value
RNA id AMCG00011185
length 3673
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00011185
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13348564 ~ 13367027 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCATGCGCAGTGGCGCGCAGTGTTTTTGTAATGGCTGCTGGTTGACATGACTCAGAGCCGTCTCCTCGCCGGAATTAACGAGCAAAGCCACACCGTTACCTTGGGTTTACCTGAGTTACAATGGTTGATTTCCGACCGGAGAAGCTTCGCGAAACAGAAACACACGGAGTGAAAACAAGCATCGTGAGCAGCAGGACAATGGCTGTCAAGGAGAAGCTGGAGGCAGTGTTGAATGTGGGTCTGCGGGTGCCCAGTATCATGCTGCTAGATGCGCTTTACCGTTGGGACGTCAGCTCCTTCTTCCAGAAGATCCAGAGGAGCAGCCTCAACAACAACCCCCTCTTCCAGTACAAGTACCTGGCTCTGTACCTGCACTATGTGGGTTACATCCTCAGCGTGGTTCTCCTGACCCTTCCTCGACAGCATCTGGTCCAGCTCTACCTGTATGTCCTCACGGCTCTGCTCCTCTTTGCTGGACACCAGATCTCCagGGATTATGTGAGGAGTGAGCTGGAGTCCGGCTATGAAGGACCTCTATACCTGGAGCCACTGTCAATGAACCGCTTTACCACAGCTCTCGTAGGACAGCTGGTGGTGTGCACCCTGTGCTCCTGTGTCATGCAAACCAAGCAGATCTGGCTGTTCTCCGCTCACCTGCTCCCCCTGGTGGCCAGACTGTGCCTGGTGCCACTGGAGACCATTGTCTTCATCAACCGCTTCGCCATGATATTTACTGGCCTGGAGGTCCTCTACTTCCTGGCCTCCAATTTACTGGTGCCCTACAAGCTGGCCAAGACTGCCTATCGTGAGCTCGTGCAGGTGGTGGAGGTGTATGGTCTCTTGGCCCTGGGCATGTCTCTGTGGAATCAGCTGGTGGTGCCCGTGCTGTTCATGTCTTTCTGGCTGGTCCTGTTCGCCCTGCAGATCTACTCCTACTTCAGCACGCGAGACCAGCCCACCTCGAGGGAGAGActgctcttcctcttcctcaccaGCATCGCAGAGTGCTGCAGTACGCCCTACTCCCTGCTGGGGCTGGTCTTCACCGTGTCCTTTGTGGCGCTGGGCGTCCTCACGCTCTGCAAGTTCTACCTGCAGGGATATCGCGCCTTCATGAATGACAACACCATGCACAGgGGGATGACGGAGGGGATCACGATGCTGATCCTGGCGGTGCAGACAGGGCTGATCGAGCTGCAGGTCATTCACCGAGCCTTCCTCCTCAGCATCATCCTGTTCATCGTGGTAGCCTCCATCCTGCAGTCTATGTTGGAGATCGCTGACCCCATTGTCCTGGCACTGGGGGCATCTCGAGACAAGAGCCTCTGGAAGCACTTCCGCGCTGTGAGTCTGTGCCTGTTCCTGCTGGTCCTGGGAACGCTGTTAATCTACGTGCTGTTCATGGTGGAAGAGTTCCGCAAGGAGCCGGTGGAGAACATGGATGATGTCATCTACTATGTGAACGGCACCTACCGGCTGCTGGAGTTCCTGGTGGCACTGTGCGTGGTGGCCTACGGCGTGTCCGAGACGATCTTCGGCGAGTGGACGGTGATGGGCTCCACCATCATCTTCATCCACTCCTACTACAACGTATGGCTGCGTGCCCAGTTGGGCTGGCAGAGCTTCCTGCTGCGCCGGGACGCCGTCACCAAGATCAAGTCTCTGCCCACTGCCACCGTGCAGCAGCTGGAGAAACACAATGACATCTGTGCCATCTGCTACCAGGACATGAAGTCAGCTGTGATCACTCCCTGCAGTCACCTCTTCCATGCTGGCTGCCTCAAGAAGTGGCTCTATGTGCAAGAGACCTGCCCCCTCTGTCACAGCCAGCTCAAGGGCCAATCACAGACCTCCGTGACCAATGTGCCCCCCCAGGAGCTGGCACCGGCAGCACAGGAACCTGCCAATCACAATCAAGGGGAGGATGGGCCAGTACAGCCTGCCCCAGAGGACCATGCAGCCCAAGGAGAGAGGGACTCTGTGAGAGAGGGCAGCACTGGGCCTTCCCCCACACCCACAGGAGACACCAAGCATCCTGAGGGACAAGCCGCAGGCTGCCAGCCTCCCTCTGTGCACTTGGACCCCGGATCGGACAGTTCTGAGGAGGTGGGCAGCCAGTGTGGCGCTGTGGGCGGCCAGTGTGGCGCTGTGGGCGGCCAGTGTGGCGCTGTGGGCGAGGGCTGGGGAGGGCTGGATCCTTCTCGGACAGCCCACCGAGGAGTCCCCCAGAATTGTCGACCGCCCATGCCCAGCCCTCACCCTGCCGGACATGAGCTGGGCAGTGGGCCTCCGGGGTCCCCCCAGGGGGCAGCTCAGGGGCTGGCCACTCCCTCGGCACAGGGACTCTGAGGGAGCGTCCGCTGTAGACTGGGGGCCGACACCCCCTCTGTCACAACGCAGGCAGCGGCCATTAAGAGTGGGGAGTTTTGCAGGATGGAAGTTACTGAATAACACCTTTCCTTCTCCCCAGACCCTTCCAGCTCTCACAGGATCCCTCCCAGGGAGTTAAGCCTACATTATGACTGTTAAAGGAAGGGCCAGTTACTGGGTAAAATAACATGATGATAATTGACTAAATATGAGGAATACTCCATATCAGACAGAAAGAGACTGAACATTTGGTGAACTAGAAGCTTTAAGCACGCTTAGGCTAGCACGCTCTCACTGTCttgtattagattttttttttttttaatctatatatgtatacacacacacacacatacctgtgtgtatgtatgtatatatatatatatatatgtgtgtgtgtgtgtatgtatgtatgtatatatatatataatatacacacacacacatcgtgtatgcatatatatgtatgtgtgaatgtatacacacacatatatagtgtatatgtatatacatgtataatgcCACTGCATTTGCACTAATGTAATTTATAGCAATGCTCCAAAGTTGTCTTGTCAGGTaccaaatatttttctttggtgtgtgtgaggaaaacaaaacaaacatacatacacacatatatatatatataatagaaataaGGGGGGTTTGATATATGATAGTGTTAATGCAGCGCCAGGTAAAGGGAAGTGGGCTGAAGCTTATATGAACACTTTGGTGCCCTCTATGGGTAGAAGTGGGAAGAGCTTATGACCATGGATTAAACTGGTGCAAGCAAGAGAACTTATTTCAGTATAGAATTGACTTGGACAGTATTATTTTGGCATTAATTGCATTTGTgagaatgaatacataaaacaatgtatgaACAAACTTGGCAaatgccatttttattattactttgtaGTAATTGGATACATCTTGCTCACAGTTCCTTGAATGGAAGAGCAGTGGCTGATGGTGTGTGTAGCTTTTACATCCATCATGGCTTCTGTAGacctttttccttttgtatcTTATCATTTGAATTGTAGTCTTGAATgaagggatttgtttttctgctggaGAGACAAAGATGCCCTAATCCAGATtacattctatttttattatggtgaattttttttccattttttttttttatattaaatttacATGATGTTAATCTGTGAATGCTGAATTCAGATCAAATCTCAGTCGTGATCAGCGAATGAATTTGTCTGAAatctggtttttattttacaaaactgaaTGTCTAAATAAATTGAAGCATCAAATTTAAACAAG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23789 RNF145; E3 ubiquitin-protein ligase RNF145

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131175 lncRNA upstream 119148 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 329500 13018792 ~ 13019064 (+) True G104835
TU131072 lncRNA upstream 408394 12935436 ~ 12940170 (+) True G104814
TU131054 lncRNA upstream 517284 12830849 ~ 12831280 (+) True G104800
TU130967 lncRNA upstream 673493 12670376 ~ 12675071 (+) False AMCG00011163
TU131203 lncRNA downstream 186374 13553401 ~ 13555056 (+) True G104910
TU131220 lncRNA downstream 298920 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA downstream 298920 13665947 ~ 13679380 (+) False G104923
TU131310 lncRNA downstream 490804 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 491624 13858651 ~ 13858982 (+) True G104980
AMCG00011186 mRNA upstream 17966 13328382 ~ 13330598 (+) True AMCG00011186
AMCG00011187 mRNA upstream 33855 13285297 ~ 13314709 (+) True AMCG00011187
AMCG00011184 mRNA upstream 132650 13190779 ~ 13215914 (+) True AMCG00011184
AMCG00011181 mRNA upstream 179415 13156251 ~ 13169149 (+) True AMCG00011181
AMCG00011177 mRNA upstream 344137 12999534 ~ 13004427 (+) True AMCG00011177
AMCG00011189 mRNA downstream 9564 13376591 ~ 13379795 (+) True AMCG00011189
AMCG00011192 mRNA downstream 120919 13487946 ~ 13492456 (+) True AMCG00011192
AMCG00011191 mRNA downstream 135608 13502635 ~ 13505520 (+) True AMCG00011191
AMCG00011190 mRNA downstream 171221 13538248 ~ 13544283 (+) True AMCG00011190
AMCG00011193 mRNA downstream 293897 13660924 ~ 13677591 (+) True AMCG00011193
TU131073 other upstream 405482 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 729509 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 821533 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1281227 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1504475 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 1252663 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1953753 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2483619 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2486737 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2596313 15963340 ~ 15984079 (+) True G105373

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014619 True 1953 mRNA 0.55 11 NC_007125.7 34971554 ~ 35009722 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_12831074_12852405.mRNA True 2472 mRNA 0.51 10 CI01000000 12830672 ~ 12852537 (+)