RNA id: AMCG00011188


Basic Information

Item Value
RNA id AMCG00011188
length 1138
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00011188
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13328493 ~ 13343464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTCTGTGTCAGTCATAATAAAGTGGGGTGGGCAGGAGTACTCCATCACCACCCTGTCTGAAGAGGACACCGTGCTCGACCTCAAACAGTCCATCAAATCTCTCACCGGGGTCCTGCCGGAGAGACAGAAGCTGTTAGGGCTGAAAGTAAAAGGAAAACCAGCTGAAGATGACATCAAACTGGGCACGCTGAAGCTGAAGCCCAACACCAAGATCATGATGATGGGCAGCCGAGAGGAGAGCCTGGAAGATGTGCTGGCTCCACCCCCTGAAAACGATGACGTCATAAACGATTTTGACATCGAGGAGGAGGTGATTGAAGTGGAGAACAGGGAAGAAAACTTGGTGAAAATAGCCCGTCGAGTCAAAGACTACAAAGTAGAGATTTTAAATCCCCCCAGGGAAGGGAAGAGGCTGCTGGTGCTGGATGTGGATTACACCCTCTTTGACCACAAGTCCTGCGCAGAGACCGGGCAGGAGCTGATGAGGCCCTACCTCCACGAGTTTCTGACCACAGCATACGAAGATTACGACATTGTGATCTGGTGTAATGCGGCGATGATCACAGTACACACTCCCAAGAGAGGAGTAGTGGAGGTGAAGCCTCTGGGGGTAATCTGGGGGAAGTACAGTGAGGTCTACACCAAGAAGAACACCATTATGTTCGATGACATTGGCAGGAACTTCCTCATGAATCCCCAGAATGGGCTGAAGATCAGACCATTCATGAAAGCACATTTAAACAGAGAGAAGGACAAAGAGCTCTTCAAACTCTCGCAGTACCTCAAAGAGATTGCAAAGCTGGAGGACTTTTCGGATCTCAACCACAAGCACTGGGAGAGACCGAAGCAGCTGTTCCATGACGTGACCAGTGAACCTGCTTCACCGCTCAAGTGTCACATGGCAACACAGCAGCGCACCCCTCCGACCATagGAGCCCGTCATACCCTGGAAttagagtgtgtgtttgtgacacAGCACCAGCGTGTGGTTGAGGACGGCACCCAAGCTGTGCTGGTGGCAGGTGAAATTGCCACCAGACATCTCCACAATGGTGACAGTGATCTGGTTGCCACGCTGTCCCAGGGCTCGGTTCTCCTTCTTCCAGTGGATATCCTGACCCTGGTAGGACAGGCC

Function

GO: NA

KEGG:

id description
K17618 UBLCP1; ubiquitin-like domain-containing CTD phosphatase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131117 lncRNA downstream 388333 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 397410 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 503002 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 564826 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 804135 12523837 ~ 12524358 (-) True G104697
TU131208 lncRNA upstream 32669 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 34593 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 209976 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 318722 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 322331 13665795 ~ 13679262 (-) False G104929
AMCG00011183 mRNA downstream 136353 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011182 mRNA downstream 223938 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011179 mRNA downstream 294374 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011180 mRNA downstream 315142 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011178 mRNA downstream 329205 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011194 mRNA upstream 341170 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011200 mRNA upstream 400454 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011198 mRNA upstream 409089 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011203 mRNA upstream 513393 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011208 mRNA upstream 576204 13919668 ~ 13922667 (-) True AMCG00011208
TU131118 other downstream 384352 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 385411 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 688266 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 779500 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 871166 12435871 ~ 12457327 (-) True AMCG00011152
TU131202 other upstream 21619 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 332667 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 652736 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 723751 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 2026938 15370402 ~ 15373179 (-) True G105290

Expression Profile