RNA id: AMCG00011189



Basic Information


Item Value
RNA id AMCG00011189
length 468
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00011189
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13376591 ~ 13379795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAGCAGCCACCGCTTTATCCACATCCTCCACCCGGGGTCTGAAGAGACGAGCTCGGGagacagaagaagaagaggaagatcAGGACGAAGTCAGTGAAAGAAAGGTGGTTTTCATGTTTGGGATTCAGGAAAGCATCCAGCGGAGCGGGAGTAGCATGAAGGAGGAGCCCCTCGGCTCCGGCATGAGCGCCGTCCGGACATGGATGCAGGGCGCCGGGGTGCTGGACGCCAACACGGCCGCTCAAAGCGGAGTCGGGCTGGCCCGGGCGCACTTCGAGAAGCAGCCGCCGTCCAACCTGCGCAAGTCCAACTTCTTCCACTTCGTCCTGGCGCTGTACGACCGGCAAGGGCAGCCGGTGGAGATCGAGAGGACCTCTTTCTTGGGCTTCGTGGAAAAGGAAAAGGAATCTAACGGTGAGAAGACGAACAATGGGATCCATTACAGACTGCAGCTGCTCTACAGCAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131175 lncRNA upstream 147175 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 357527 13018792 ~ 13019064 (+) True G104835
TU131072 lncRNA upstream 436421 12935436 ~ 12940170 (+) True G104814
TU131054 lncRNA upstream 545311 12830849 ~ 12831280 (+) True G104800
TU130967 lncRNA upstream 701520 12670376 ~ 12675071 (+) False AMCG00011163
TU131203 lncRNA downstream 173606 13553401 ~ 13555056 (+) True G104910
TU131220 lncRNA downstream 286152 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA downstream 286152 13665947 ~ 13679380 (+) False G104923
TU131310 lncRNA downstream 478036 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 478856 13858651 ~ 13858982 (+) True G104980
AMCG00011185 mRNA upstream 9564 13348564 ~ 13367027 (+) True AMCG00011185
AMCG00011186 mRNA upstream 45993 13328382 ~ 13330598 (+) True AMCG00011186
AMCG00011187 mRNA upstream 61882 13285297 ~ 13314709 (+) True AMCG00011187
AMCG00011184 mRNA upstream 160677 13190779 ~ 13215914 (+) True AMCG00011184
AMCG00011181 mRNA upstream 207442 13156251 ~ 13169149 (+) True AMCG00011181
AMCG00011192 mRNA downstream 108151 13487946 ~ 13492456 (+) True AMCG00011192
AMCG00011191 mRNA downstream 122840 13502635 ~ 13505520 (+) True AMCG00011191
AMCG00011190 mRNA downstream 158453 13538248 ~ 13544283 (+) True AMCG00011190
AMCG00011193 mRNA downstream 281129 13660924 ~ 13677591 (+) True AMCG00011193
AMCG00011195 mRNA downstream 307461 13687256 ~ 13691363 (+) True AMCG00011195
TU131073 other upstream 433509 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 757536 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 849560 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1309254 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1532502 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 1239895 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1940985 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2470851 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2473969 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2583545 15963340 ~ 15984079 (+) True G105373

Expression Profile