RNA id: AMCG00011190



Basic Information


Item Value
RNA id AMCG00011190
length 684
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00011190
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13538248 ~ 13544283 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGATGGCTTCAGTTTCAGTGCCTGTGTGAACCTGTGTCCCTCTTCCTGTGGCAGGAAATTATTCTGAAGCGGGCGGCAGACATCGCAGAGGCCCTGTACAACGTCCCCCGGAACCACAACCAGCTCCCTGGCCTGGGCAACTCCTCCGTCCACGCGGGCATGATGGGCGTCAACTCCTTCACCGGACAGCTCGCTGTCAACGTGTCTGAATCCTCGCAAGCCGCCAACCAGGgttTCAGTCGGAACACGAGCAGCGTCTCCCCTCACGGGTATGTCCCGAGCACCACACCCCAGCAGACCAACTACAGTTCTGTCACCACCAGCATGAATGGCTACGGCAACACTGGCATGACAAACCTCGGGGGATCGCCCAGCTTCCTCAACGGCTCTGCGGCGAACTCACCCTACGCCATCGTACCCTCCAGCCCCACCATGGCGTCCTCCACCAGCCTGCCCTCCAACTGCAGCAGTTCCTCGGGGatcttctccttctcccctgCCAACATGGTCTCGGCTGTCAAGCAGAAGAGCGCCTTCGCCCCCGTGGTGAGACCCCAGAcctcacccccccccacctgcaCCAGCGCCAACGGGAACAGCCTGCAAGGTGAGCGTGCGGCCCCTGGGTCTCGCACAGAGGCCTACCctgccccacccccccttccaaCTGCCACTGCAGATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131175 lncRNA upstream 308832 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 519184 13018792 ~ 13019064 (+) True G104835
TU131072 lncRNA upstream 598078 12935436 ~ 12940170 (+) True G104814
TU131054 lncRNA upstream 706968 12830849 ~ 12831280 (+) True G104800
TU130967 lncRNA upstream 863177 12670376 ~ 12675071 (+) False AMCG00011163
TU131203 lncRNA downstream 9118 13553401 ~ 13555056 (+) True G104910
TU131220 lncRNA downstream 121664 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA downstream 121664 13665947 ~ 13679380 (+) False G104923
TU131310 lncRNA downstream 313548 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 314368 13858651 ~ 13858982 (+) True G104980
AMCG00011191 mRNA upstream 32728 13502635 ~ 13505520 (+) True AMCG00011191
AMCG00011192 mRNA upstream 45792 13487946 ~ 13492456 (+) True AMCG00011192
AMCG00011189 mRNA upstream 158453 13376591 ~ 13379795 (+) True AMCG00011189
AMCG00011185 mRNA upstream 171221 13348564 ~ 13367027 (+) True AMCG00011185
AMCG00011186 mRNA upstream 207650 13328382 ~ 13330598 (+) True AMCG00011186
AMCG00011193 mRNA downstream 116641 13660924 ~ 13677591 (+) True AMCG00011193
AMCG00011195 mRNA downstream 142973 13687256 ~ 13691363 (+) True AMCG00011195
AMCG00011199 mRNA downstream 147553 13691836 ~ 13696708 (+) True AMCG00011199
AMCG00011196 mRNA downstream 163241 13707524 ~ 13721661 (+) True AMCG00011196
AMCG00011197 mRNA downstream 178256 13722539 ~ 13742007 (+) True AMCG00011197
TU131073 other upstream 595166 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 919193 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1011217 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1470911 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1694159 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 1075407 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1776497 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2306363 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2309481 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2419057 15963340 ~ 15984079 (+) True G105373

Expression Profile