RNA id: AMCG00011193


Basic Information

Item Value
RNA id AMCG00011193
length 2913
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00011193
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13660924 ~ 13677591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGGATACAGCACCAACGTGGTAATGAATTACTCGGAGATTGAGTCCAAGGTTCGAGAAGCTACCAATGACGATCCCTGGGGACCTTCAGGGCAGCTGATGGGAGAGATAGCCAAATCCACATTCATGTACGAACAGTTCCCAGAAGTCATGAACATGCTGTGGACTCGCATGTTGAAGGACAACAAGAAGAACTGGAGAAGAGTTTACAAGGCCTTATTGCTCCTAGCATACCTCATCAGAAACGGGTCAGAGAGAGTCGTGACGAGCGCCAGGGAACACATCTATGATCTGCGGTCGATGGAAAATTATCATTTTGTAGATGAGAACGGGAAGGATCAGGGCGTCAACGTGCGGCAGAAGGTGAAAGAGATGGTGGATTTCGTGCAGGACGATGACCGGCTTcgggaggagaggaagaaggcAAAGAAGAACAAGGACAAATACATCGGGGTCTCTTCTGACAGCTTGGGGGGCTTCAGATACACGGGAGACCGGTATGAGTCGGAGCCCAAGTCACGGTGGGATGAGGACTGGGACAAGAATAAGGGGGTGTTCCCCTTCAGCGAGAAGCTGGGTGAGATCAGCGACAAGATCGGCAGCACAATCGACGACACCATCAACAAGTTCCGCAAGAAGGAGAGGGACGACTCCCCTGACAGGTTCAGCGACAACGAGGAAGACCGAGAGCGAGCTGCCCGCAACGGCAGGCCGGGCAAGTCAGAGTTCAAGGATGAGGAGGACACAGCGACGCCCAGGGGCACCCAGTTCACTCAGGCCACGGAGACGACCAACACGCGGAAACGGGGGGGCGTCCCTTCCAAAACTGTGGACCTGGGGGCTGCCGCACACTACACCGGGGACACGGGCAGTCCTGACGCCGGGGCGCAGAACAAGACGCCAGGAGCAGGCACGGCCGTCAGTAAGTCCTCCAGTAGTGGCTTGGTTGACCTGTTAATGGACCCCACTGTGGGATCTAATCAGACCACACCAGCAGTTGCAGCAGTGAGTGGAAACGGGGAATTTGGGGAATGGAACGCTTTCCCAGCTGGCCAGCCTCCGGCCGCCCTGCCGGCCCAGCCCCTGAGCCCCATGTCTGGTAACCTCTTCACCGCTGCACAGGTCCCTGCTCCGTTGCCTGCAGCCTCCGCCACCAACCTCTTTGACCTCATGGGCTCCTCGCAGACGTCCATGTCCTCCTCACAAAGTATGACCCTCGCCATGGCCAGTTCGCAGACCCCCTCCAGCCTTCCTATGTCCAGATCACAGccTTTACAAAACCTGAGCGGGCCCATGCAGAAGAGTGGCCAGATGTCGGTCCATCAGATGCAGGCGGCCCAGAAACACGGAGCCAAGGCGTCCCTGCCCGCCACTTGGTCTGACCCCAGCGTCAACATCAGCCTGGACTTCCTCTCAGTCCGGCTTGGCAGGGCCATATTCCTGGGTGTGCAGCCAGCCCTGAACGTAGTTGGCCAGAGCTTCGCCGGCATGAACCTGAACGTCCAGCCCAGCCCTCTGGCCGTCCGGCCGCCCACGAACCCCATGATGGCCAGCCCAGGGGTTGCCATTGGGATGCCCCCCAGCATGGCCACGGGCGGTATGGGTTTGAGTCCTATGGGCATGGCCACCGGCACCGCGATCCCTCCGAGCCAGGGTATGATGAATATGAACATGGGGATGCCCCCGGCAGGGATGGGCATGGCCGGGCCCATGGGCATGGGGATGCCAGCGATGGGCATGGCAGCTGGCATGAACACAGCCATGGTGCAGCCCAAACAAGATGCCTTTGCAAATTTCGGTAACTTCGGCAAGTGAGACAacgtgagagagagggagcgagagaagATGTGAAGATGAGCAGTTTGTCAGATCATACCAACGATGAAGGATATATAGAGCTGCACACAAAGAGTACTTGAAAAATATCAAATGCCGTCaccttttattatatatatgacatGCTGATTCAAACCAAGgaccttttgtgtttgttttttgtgtgaaatgtattgaGGATAACTATACTGGGTCAAACCCCAGTGTGAGaacatgcatacatttcttacaaaaagaataaatgaaaagagGGATTTTAACAGGAAGAGATTGCAGAGCTGGGAGTCTGATATTAAAtatctataattatttttcttcccccacccccagttTTTTAGCATATGAAATGCCATTCCATACCTCACCACACCCTACAGACAGCTCGGCACTGACACGGAGGGCGATGGTCAGCTGTGTAAATATTCTTTTGGTGTGCAAATAAATTATTGCATTTCTAAAGACTTACTCAAAGTCATGCTGGAGGGCAATCTCAACACACCCGTGTTAGAAtcttctattgtttttttcattttaatgtttttttgtttatcattggagactgacttttaaaaatggcaaAGGTTTTAATTGTCTTCTCCTGCTTTGCCGTACCAGAATTGGTCTCTGTCCCGAATTGGTTAACCCTGCCTTCTGAAGCGGGTCGCTGATATTAGAGACCAGGACACTGAAAGGCTGTTAATTACAGGCCGTCTCTATGGCCTTTCTCTGCtgggtttatttttgaaaggaaatgatatttataaaaaaaaaatgtatatcaattTGACATCTGAGTAATAACTGTAGTTATCTGTAGTTGTAGACAGAGCAGTGTCCCTGGGTTATCCCTCACCTAGTACAGCATCCCCGATGCAGTCAGTGGCCttcacactttatatatatatatatatatatatatagtgtgttcaaacaatgttttattcaggAAAGGAGATAACATTCAGTATTTATCACAGGCCATAATTAATATCCAtgaagtgtacatttttatttccaccaCCCTAAAGTCCTTGGTCAATTAATTAGGCTATTTTGTGTTCTTGGTGTGTGTGT

Function

GO:

id name namespace
GO:0045682 regulation of epidermis development biological_process

KEGG:

id description
K24721 CLINT1, EPN4; clathrin interactor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131203 lncRNA upstream 105868 13553401 ~ 13555056 (+) True G104910
TU131175 lncRNA upstream 431508 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 641860 13018792 ~ 13019064 (+) True G104835
TU131072 lncRNA upstream 720754 12935436 ~ 12940170 (+) True G104814
TU131054 lncRNA upstream 829644 12830849 ~ 12831280 (+) True G104800
TU131310 lncRNA downstream 180240 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 181060 13858651 ~ 13858982 (+) True G104980
TU131317 lncRNA downstream 190811 13868402 ~ 13876178 (+) False AMCG00011204
TU131374 lncRNA downstream 313364 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 335530 14013121 ~ 14061024 (+) False AMCG00011209
AMCG00011190 mRNA upstream 116641 13538248 ~ 13544283 (+) True AMCG00011190
AMCG00011191 mRNA upstream 155404 13502635 ~ 13505520 (+) True AMCG00011191
AMCG00011192 mRNA upstream 168468 13487946 ~ 13492456 (+) True AMCG00011192
AMCG00011189 mRNA upstream 281129 13376591 ~ 13379795 (+) True AMCG00011189
AMCG00011185 mRNA upstream 293897 13348564 ~ 13367027 (+) True AMCG00011185
AMCG00011195 mRNA downstream 9665 13687256 ~ 13691363 (+) True AMCG00011195
AMCG00011199 mRNA downstream 14245 13691836 ~ 13696708 (+) True AMCG00011199
AMCG00011196 mRNA downstream 29933 13707524 ~ 13721661 (+) True AMCG00011196
AMCG00011197 mRNA downstream 44948 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011202 mRNA downstream 173850 13851441 ~ 13854844 (+) True AMCG00011202
TU131073 other upstream 717842 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1041869 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1133893 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1593587 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1816835 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 942099 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1643189 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2173055 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2176173 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2285749 15963340 ~ 15984079 (+) True G105373

Expression Profile