RNA id: AMCG00011194


Basic Information

Item Value
RNA id AMCG00011194
length 2442
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00011194
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13684634 ~ 13687704 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGACTGTTTGGTATCATACATCTGTATATTGTTTAACTTGACTGTTTCTGAGTCCTATCATAAACTAGTGATACAATATTGAACTGAAATGGTGACATAACATACATATTGGagaaaatcaacaataacaaccagaatttaaagtatgtgaaaataaatgcaggtgactgctttgtattattattgaatatgtattgtgtatcaGTGCTGcttttgtatatgtttgtggATTCATCTAAGAAGTTGTACAATTTAGGGCTagaccacaccacaccacattATACATTCCTGTTTATGCAATGGCACACAACACTACACTTTATAGTCGTTTGGGTCACAAAGGTGTTCTGTGGGACCTGATATGTCGCAGACTCATCATATAAACCCGCTTTTTATTGTATCACCGCCCCACTGGtcagtgtatgtgtatttttctgtgAATGGCATTTCAGTTAtagtattacaataattatgaataatacaaGAACAGGCTGCTACATGCAACACAAGTTACACCGCGTCCTCTTGCCCCCTCTAGTGGCGCGCAGGGCTCACAGCGTCCCACAGACATAAACACAGGCACATTTCCCATGGTCCCCAGCTGCGGGTCTTTCAAACATGGAGGAGACCGAGAGGAAGACAACAGAGCAGCGGCACTCAGGAGCCGGGAAGAGCGGTCCGGTGGGACGGCAACCggccgaggaggaggagggtgcaGGTCGGGACAAACCGACAGACCCGGAATCCAAACTAGACGTCACTTCCCACCAGTTCGACCCGCTGCTGGCCCTGTACGCGCCCGACGTCCCGCTGCCGTTCCCCGACGTGCGCTGCTTCAACAACATCGCCCAGTACGAGAGCTTCCTGAAGGGCGGCAGGGGCAGAGCCAAGCCCGGGAATGTGGAGAAGGCGCGGCAGAAGAAGGCCAGGAAGGGCGTCCCGGACCCGGAGAGGATCGAGCGGCTCCGCAAGCTGATGGTCAACGCGCCGCCCGAGGGAGAGGAGGCGGCGGCCCGGAGGGGCAAGAAGGCCAGGGCGCCCAAAAACGTGCTGACGCGCATGTCAGTCCACTCCGGCAGCCCACTGGGAGAGCTGTATCGCTGTGTGCAGGAGAGGATCCGGGTCAGAGTTCACATCCGCACCTTCAAAGGCCTGAGGGGGGTCTGCTCCGGCTTCCTGGTGGCGTTCGACAAGTTCTGGAACATGGCTCTGGTGGACGTTGACGAGACATACAGGAGACCTCTCCTCGGGGAGGCCATTAATCACGAGCGCGCTCTGACCATCACTCGGCTGTTCGACAGGCTGAGACTGCAGGAGTCTGGGGCCCCCGTGACGGAGGGACAGGAGAAGGCTGCAGACGGGAGCGTGGCTGCCGATAGGATGAATGCCCCCCAGCTGCGGAGATCGCCCAGGAAGAGAGCCGGCACAGACCCCAGGACTGTGCAGGGGAGTCGTGGATCAGAGGAGGCGAGGGGGACGGGGTCCAGGGGGCTAAGGGTCGCGGGTCAGGGCCACGACTCCAGTGCCCAGACAGAGGCTGGTGTCCAGCCCAGGACAGGACAGGCAAAGCCCAGGGTGGATTACCAGCAGGTCCACACCAGACACATCAACCAGCTGTTCATCCGCGGCGAGAACGTGCTGCTGGTGAACCTGCAGGAGCTGTGAGGACAGAAGAGCTGCGTCCGTGACGTTCACGCATTAATaactgtacatgtatatatgaacTGCAGAAATCTGACTGGACTCGGATATGAATTGTTTTTCCTCTTGATACTCTAACGCAGGAACAGTCATTAGGAATGGTCTTTTTCCAGCTCAGCCTCTGTCTCTAAACAACATACACGAcctaaaaaacaataaaattgattttttgctacttgtcctggagagccacagtgttAGACAGCTGTCAGCATGCTTTTGTACAAACCCTACACTACACTATAGTtcacacacaatttaaagttTTCTCCGCATGTCTTCTAAATACGATCCTTCCTGCCGCGTTGCCTGCAGTTTCCCATTCCCtccagctgagggagtcagatATCGACtttacattaaaagtaaaataaatgtctacaTGTGTTCATcgacacacattcacacttcAACGTCAAAATAATTCGCTTGCTTTCATCTACGAAAACGTAAGAATCTTGATATTAAAGTATGTGGGTATTTTGCTTTATATTCAAGATTCCTTAACGTGTGAGTAATTAATGGGAAGTTTGTGGCCTGCGTCTTTGTGATTGCAATTATAACGTTTGCATTTCTGAAACCTTGTTCACATCTGCCTCTGACCAACTGAGCTCCACTTTCTCTTTCAGTTTGTACTGTCTGTGTCCACCACCCTTATTGTGTTTTCTAGCAGACGCTCTTGTCCGGGGtgacaattgttacaatatatcccattctttttacatacaattacccattt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131246 lncRNA downstream 5372 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 16918 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 129560 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 306335 13378057 ~ 13378299 (-) True G104916
TU131208 lncRNA downstream 307637 13376133 ~ 13376997 (-) True G104915
TU131342 lncRNA upstream 176817 13864521 ~ 13867615 (-) True G104998
TU131407 lncRNA upstream 377637 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 382700 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 511123 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 531251 14218955 ~ 14261910 (-) True G105080
AMCG00011188 mRNA downstream 341170 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011183 mRNA downstream 492494 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011182 mRNA downstream 580079 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011179 mRNA downstream 650515 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011180 mRNA downstream 671283 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011200 mRNA upstream 56214 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011198 mRNA upstream 64849 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011203 mRNA upstream 169153 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011208 mRNA upstream 231964 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011207 mRNA upstream 251655 13939359 ~ 13946548 (-) True AMCG00011207
TU131247 other downstream 5372 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 317560 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 740493 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 741552 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 1044407 12634856 ~ 12640227 (-) True G104749
TU131382 other upstream 308496 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 379511 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1682698 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1811830 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 2275634 15963338 ~ 15973872 (-) False AMCG00011259

Expression Profile