RNA id: AMCG00011196


Basic Information

Item Value
RNA id AMCG00011196
length 4558
RNA type mRNA
GC content 0.50
exon number 19
gene id AMCG00011196
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13707524 ~ 13721661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTGTTCTCTCCTGCTTACACTGAAGCCTGGTACAGCCCCGACGGAGTCCGGCACTCCCGTTCGCCCCCGCCCACAGAGCACTGTTTTTACCACGGGACGGTGAGGGGCCAGGAGGGGTCTGGAGTGGCACTCAGCACCTGCCAGGGTTTAAGGGGTCTGATCGCAGTAAACAACAGCCGGAGTTTCCTGATCGAGCCACTACCCGGTGCCCTGCAGCCTGACCGGCACGCTCTATACCGCACAGAGAGTCTGCGAGTGCGTGAGGGAGGCACCTGTGGACACGGGGGCGGCCTGGATGACATCATCGCCGGGCTGGGACACTGGCGAGGCAGGgaaaagAGGGATATCAGTCAGAACATGAAGTATGTGGAGCTGCTGGTAGTTGCTGACTATGCGGAGTTTCAGAAGCACAATCGGGACTATGAGAAGACCAAGATGAAATTGCTGGAAGCTGCCAACTATGTAGATAAGTACTACAGGGCTCTGAGTATCCGTGTGGCCCTGATCGGTCTGGAGGTGTGGAACGACACAGACAAGATCGCAGTGTCAGAGAATCCCTACAGCACCCTGGGAGCCTTCCTGGCCTGGAGACGCAAGCAGCTGGGCCGCCTTAGCAACGACAACGCGCAGCTCGTCACGGGGGTGTCATTCCAGGGGACCACTATTGGCCTAGCCCCTCTCAAAGCCATGTGCTCGGAGTACCAGTCGGGGGGGGTCAACTCGGATCACTCGAACAGCGCCGTGGGGGTGGCAGCCACCATGGCCCACGAGATGGGGCACAATTTCGGAATGAACCACGACACCGACGGCTGCTGCTCTGCCCGCCCTGAGGATGGGGGGTGCATCATGGCCTCCGCGACAGGacACCCGTTCCCGCGTGTATTTAACCCCTGCAACAGGAAGGAGCTGGAGAGGTACCTGGGCTCCGGGGGGGGGAAGTGTTTGTTCAACCCCCCTGACACCAGCACTATCTATGGGGGCCGGCGTTGTGGGAACGGATACCTGGAGGAGGGCGAGGAGTGTGACTGTGGGGAGGTGGAGGAGTGCTCCAGCCCATGTTGCAACGCCCATAACTGCACCCTGCGCGCGGGGGCCGAGTGTGCCCATGGGGTCTGCTGTGACAACTGCAAGTTGAAGAGCCCAGGGGTGCTGTGCAGGGAGCCCTCAGGGTCATGTGACCTCCCTGAATACTGCGACGGGAAGTCAGAGTCCTGCCCGGCCAACTTCTACCTGATGGATGGGACCTCCTGCGCTGGGGGTCAAGCCTACTGTTACACTGGAATGTGTCTGACCCTGGAGCAGCAGTGCCTCTCCCTGTGGGGACCTGGTGCCCAGCCCGCCCCAGACCAGTGCTTTGAGCGGGTGAATGCAGCGGGGGACACCTACGGCAACTGTGGCAAAGACCTGATGGGGCAATACAGGAAGTGTGCGAGCAGGCATTCCAAGTGTGGGAAAATTCAGTGCCAGAGTCCTGTATCCAAGCCTGTGGAAACCAATGCTGTTGCCATAGACACCACCATCACGATCAACGGGCGTCCAGTGAGGTGCCGGGGTACGCATGTGTACCGGAGCAGCCAGGGAGTGGAGAACATGGGCGACACGCTGGACCCCGGGCTGGTGATGACTGGGACCAAGTGTGGGGAGCAGGAGTTctgcaacaacaaccacaactgCCACTGCAAGCCAGGCTGGGCCCCCCCGATCTGTGACCAGCCAGGGGCAGGAGGCAGTGTGGACAGCGGCCCAATCATCACACACAGCAGCCTGCTTCCTGTTTTCTTGCTCCTCCCCCTGTTCCTGGCCCTGGGATTGGCTGCTGTTGGGCTCTGGTGCTGCTACAAACATAGGCTCCACCCCTTAAAGAAGAGCTCAGCCCCTCCACTGGGAGCCCAACCAACCAGTGCTTCTGCTCCTCCTGATGAGAAGTCCGTGGGCAGTGGTCACACCAACCCCACCTTCCGGCTGAAGGGCAAGGATGCACACAGGCTGGGTGCCCCGCCCCCCAGCCCAGCCTGCCCTCCCAGACAACGCAGCCATATCGTGAGGCCAAATGAGCTGCCTAACAAACACAGGCCTCCAGTACCAACAACCACCCCCTCCACACTCCCGAAGAGATGCTTGATGACCCATGCTGGAAACACGCAGAAACTCAGGTTTCAACTGGAGAACAACAGTTCGAGCTGAGGAGCGCAGCCTCACGCAGTTCTGGAAATGAAATACTCATGTGCTGTGTGCCTGGCTCAGGGAGAGTTAAGATCTGTACCTGCAGCGAGTTTATATTGCAGTAGATCAGCCTTGCTCATACAGGCCTGCAATCGAATGTCAGTGGGGTAACATCAGGAAACGAGGGGTGCCCAAAGCAGAACCAAATCTGAGAGTGGCAGAGGAGCTGATGGCAGGGGGGATTCATTGCTTTCTCACACACTCCTTCGGTGTAGCgtaggtctgtgtgtctgcactgCTGTTGCCTCCCTGACTGCAATGGGCTGTTTTTAGTGACTTGAAAACCCACGTTATCACatttgctaatttatttttgctgatttgtaggattattttttattttttatttacaagaagttttttttattccaagttCACGACGATTCTTCCTCCTCTGAGATGTGGCGGATGTTTAATGTTGCCGATTACGGCTCCCCGCGTTAGGAGGACTGCTGATAGCAGGTCTTTCTTGCAAGGCCAAAGTGCTTTATACAGGTTGGGAGACGTCTCCTGTCTTAAtcacttgatttattttgatttaacgGAAATCTGGCCAATGAACACTGTATCATCGATGCTGTAACACTTGGGGTGTGTAACCTGGGCAATGGTGGGAGACAGGCTGGAGGTGAGGGCTGCACAGGCCTGCTGTATCTTTCCCTGTGCTGTAAGAGGTCGGGCGACTCTCTGTCTCTGGAGGCACGAAGAGCCTCTCATTGTAGGTGTGCAATTGGCTGGGTGATCTCCAGGGAATTGAGATCACATTAACCATGTACTGTAAGAGCAGAGGAATGATTTAAAATGCCTATTCTGAGAATCACTACATGGCACTCGTCCGGGCTCTGAAGAGAGACTCCTGTGTCCGGGAGGACAGCACAGCCCGTAGATACGGGTTTACTCTGTtcaacatgccttcactgtgctttactagaCCAGACCCTGGGAATAACAatatttcttttgtttattgtttattgtcacctacattaaaaaatacagccaagtatattaaaatgcaatgaaatacTTCTGCCATTGCTCTCTTAGCCTTATAAACatagaagaaacaaacaacaacacagaacagcTGGTATTAAGAGACCAAGAAAGAGTCTTTTGTGACACCATGTGACACTATTTCTAAGGCCTGTTGACCATGGCAGACCAGGGTTTATTTCAGGTAGAGTGTAGTATAGCACGGTGAAGCCATTTTAGAAGCATATGAAACCACTGTACAACCTATGCTACAACCACAATAAAACCGTGTTAATGTGACACGTATCCTGTTGTAGGTTTATCAGGGtaaatgttcatgttttgtatCAACATTATGTACAGTAAAACATCATAGCCTTTTCAGTTGGTGTAGTTACCACTTGTGTCCAGCTGAGGGAACCAGACTTTGAACTATTTtctaaaaaacaatgcaatggtTTGTTGTAGCCTAGTTTTCAGGTCCATCCAGAAAGGAAGCAGGGgggcaaaattatttttaaagcctgaTTAAAGCAGccacattaattcatatttttttatgcactAGAAAGTGgataaatgttacattataaattatttcaaaGGAGTTTATGAAGTGACCATAATGAGGTTTGAGAAATTACTTTGAAACCAATTTCTTACTTTCGCCCCTGTTTAAAATCATGCTGTTAGTACgcatatttacacacaaacacccccaGGATTCAACAATATgcaaaggtttttgttttcagtaaatacacGGTGGGTGTTGGAGACGACTTGATGATCTGATCAAACATACAATGGTACCGGAAACTGTCCTCATCTGAAAATATGTTATATGCATTCATAGAAATTCAGCTGtaatacttgttttttgttttttactcatGGAAGCCTCGAATGATgaggattttagtttttatgtaaAAGGGAATGGATGTTCTTTGACCTTCACTTGATAAGCCTGTGACTTGTGTTTTGTCTGCACCATAATAACACTGCCACAAACATTGGGCAAATAGCTCACTCTGCCAACACTGCCACAAACATCACTGAcgtggagttttttttttaatatatttgttaaatattgtgGTAAATTTAACATGATTTAACATGGTAGAAAACAGTGAATGTGGCTTGTGTCTCCTACAGGGTTTCTATTGGCCCATCCTTGTGTTTACTACAAGGCAGTCTTTAGGcatttaagaaatattattattacatgtttttatttattttgtatcttgtgtttttaaaagtctttatggagaacaaataaaagtataaaccATTGATCTCTCTGGGTGGTTGACCTATGCAAAAACAAGCTCTATCCTGCATTGTGCCt

Function

GO: NA

KEGG:

id description
K08608 ADAM19; disintegrin and metalloproteinase domain-containing protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131220 lncRNA upstream 28144 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA upstream 28144 13665947 ~ 13679380 (+) False G104923
TU131203 lncRNA upstream 152468 13553401 ~ 13555056 (+) True G104910
TU131175 lncRNA upstream 478108 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 688460 13018792 ~ 13019064 (+) True G104835
TU131310 lncRNA downstream 136170 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 136990 13858651 ~ 13858982 (+) True G104980
TU131317 lncRNA downstream 146741 13868402 ~ 13876178 (+) False AMCG00011204
TU131374 lncRNA downstream 269294 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 291460 14013121 ~ 14061024 (+) False AMCG00011209
AMCG00011199 mRNA upstream 10816 13691836 ~ 13696708 (+) True AMCG00011199
AMCG00011195 mRNA upstream 16161 13687256 ~ 13691363 (+) True AMCG00011195
AMCG00011193 mRNA upstream 29933 13660924 ~ 13677591 (+) True AMCG00011193
AMCG00011190 mRNA upstream 163241 13538248 ~ 13544283 (+) True AMCG00011190
AMCG00011191 mRNA upstream 202004 13502635 ~ 13505520 (+) True AMCG00011191
AMCG00011197 mRNA downstream 878 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011202 mRNA downstream 129780 13851441 ~ 13854844 (+) True AMCG00011202
AMCG00011201 mRNA downstream 142954 13864615 ~ 13867345 (+) True AMCG00011201
AMCG00011204 mRNA downstream 146676 13868337 ~ 13878282 (+) True AMCG00011204
AMCG00011205 mRNA downstream 170093 13891754 ~ 13900038 (+) True AMCG00011205
TU131073 other upstream 764442 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1088469 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1180493 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1640187 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1863435 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 898029 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1599119 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2128985 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2132103 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2241679 15963340 ~ 15984079 (+) True G105373

Expression Profile