RNA id: AMCG00011198


Basic Information

Item Value
RNA id AMCG00011198
length 1170
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00011198
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13752553 ~ 13778757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGGGAAACATGGCCTTGGCATAGGAGTCTCATTAGCTACCCAGCGTGcTGATGAACTTTCTAATTATACTAAAGCTAATGCTGACATCATCTCCACCGTTGAGTTCAACCACACGGGGGAGCTCTTAGCGACGGGGGACAAAGGAGGGAGAGTGGTTGTGTTccagagagaacaggagAGTAAGAACCAGCCACACCGGAGAGGGGAGTACAATGTTTACAGCACCTTTCAGAGCCACGAGCCGGAGTTTGACTACCTGAAGAGCCTGGAGATAGAGGAGAAGATCAACAAGATCCGATGGCTCCCACAGCAGAACGCTGCCTACTTCCTACTCTCCACCAATGGTACATGGGGTGGGGCGGATAAAACCGTGCCCGTGCTTCAGCCCATGGACCTCATGGTGGAGGCCATGCCCAGACGGGTGTTCTCCAACGCCCACACCTACCACATCAACTCCATCTCCGTCAACTCCGACTACGAGACCTACATGTCCGCCGATGACCTGAGAATAAACCTATGGAACCTGGAGATCACCAATCGCAGCTTCAACATTGTGGACATCAAGCCGACCAACATGGAGGAGCTGACGGAGGTGATCACAGCGGCCGAGTTCCACCCCAACCAGTGCAACACCttgGAGCCTGAGGACCCCAGCAACCGGTCGTTTTTCTCCGAAATCATCTCCTCCATCTCAGATGTGAAGTTCAGTCACAACGGGCGCTACCTGATGACCCGGGACTACCTCACGGTGAAGGTGTGGGACCTCAACATGGAGAGCAAGCCCCTGGAGACCTACCAGGTGCACGACTACCTGCGGAGCAAACTGTGCTCGCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAATGTGTCTGGAACGGGTCTGACAGCGTGATCATGACAGGCTCGTACAACAACTTCTTCCGGATGTTCGACCGCAACACAAAGCGCGACGTGACCTTGGAAGCATCCCGGGAGAACAGCAAGCCGCGCGCCATCCTGAAGCCGCGCAAGGTGTGCGTGGGTGGCAAGCGGCGCAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACACTGCCTGGCACCCCACAGAGAACATCATCGCCGTGGCCGCCACCAACAACCTGTACATCTTCCAGGACAAGGTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131246 lncRNA downstream 73291 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 84837 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 197479 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 374254 13378057 ~ 13378299 (-) True G104916
TU131208 lncRNA downstream 375556 13376133 ~ 13376997 (-) True G104915
TU131342 lncRNA upstream 85764 13864521 ~ 13867615 (-) True G104998
TU131407 lncRNA upstream 286584 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 291647 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 420070 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 440198 14218955 ~ 14261910 (-) True G105080
AMCG00011200 mRNA downstream 7328 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011194 mRNA downstream 64849 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011188 mRNA downstream 409089 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011183 mRNA downstream 560413 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011182 mRNA downstream 647998 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011203 mRNA upstream 78100 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011208 mRNA upstream 140911 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011207 mRNA upstream 160602 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011211 mRNA upstream 215226 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011216 mRNA upstream 432868 14211625 ~ 14340740 (-) True AMCG00011216
TU131247 other downstream 73291 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 385479 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 808412 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 809471 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 1112326 12634856 ~ 12640227 (-) True G104749
TU131382 other upstream 217443 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 288458 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1591645 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1720777 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 2184581 15963338 ~ 15973872 (-) False AMCG00011259

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015936 True 1302 mRNA 0.53 9 NC_007125.7 52525587 ~ 52542928 (-)
grasscarp (Ctenopharyngodon idella) CI01000040_04063098_04068134.mRNA True 1190 mRNA 0.45 5 CI01000040 4062947 ~ 4068198 (+)