RNA id: AMCG00011205


Basic Information

Item Value
RNA id AMCG00011205
length 2408
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00011205
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13891754 ~ 13900038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaaacaatCAACACAGGAGGACCAGACAAGCAAGCTTTATTAAGCCACTGAGGCTAGAAAAATACTCTTTTGTGACTGAATTAATTGATTACTgccaatataaaataaaaactggaaacaactggacctgaaaaacaacagcaaagatTCAGATTAGACACAGAAGATCTGTGCTTGGCAATGCCTCAGCCTAGCATAAGTGGAATGGATCCTCCTTTTGGGGATGCCTTTCAGAACTACAGCTTTGCTGACCAGGCACTGACCAGCACTGATCTACTGGCGAGCAGCTCCGATCCTGATTTCATGTATGAACTGGACCGAGATATGACTTGCAGACAGAGTCCGAGAGGCAACATCATGTCTGTGGGGGACTGCAAAGAGATGGAAGGCATGGACCACTTTACAGAGGTGGACAACGACCCCACTTGCAACTCCAATTTCGAACACTGGGACACGTACTGGGAGGACTTGACCAAGTACACCAAGCTGACCAACTGCGACATCTGGGGGACGAAGGAGGTGGATTTCCTGGGTCTGGATGACTTCTCCAGCCCTTACCAGGATGAAGAGGTGATTGGGAAGACGCCCACCTTGGCGCAGCTCAACAGCGAGGACTCCCAGCCTGTGTGCGACACCCTCTACCACCCCGACCTGATCCTGGGTCAGAAGCCGCATACCCTCACTCCTTCCATCAACAGGAAGAAGGCGAGCTGCAGGCTGGCAGCCTCCAGCTCCACGATGGGCAGGAACCCGCTGCCAGATTACGCAGAGGGCGTGCAGAAAGCTACCAGGCCTGTGCCTTCCAGCACGGAGACAATCTCCAAGGCTCAGGCCCAGAACCCCAAGGTGATGTCGCTGACCTCGGACAGCAAGGACTATGTGCGCAAGGCCAAGGTCAGGATTAATGCGGCTCCCCGCAGACCGATGATGGATGCCGCTCCTGCACAGGCCAACCTCACCATCGACTCCTCATTCGCTGAGAACCGCAACACACCTGTTCCTACCACCAATGCAGCTACAGCCACCAccactgctgctgccgctgctgctactgctgctgctgcagctgccaCCACGGCCTCCCCCACTCCTTCTGCTGCGGCCACAGCAGTGGCTTCAGCCGTGGAGGACAAGAAGTTGGAAAAGCCCAGGGTGGAGGTGGCCCCAGTTCTGGAATTCAGTGCCCCAGCCGTGGTCTCCCGAGAACTGTTTCCAGCAGCAGGGGGCAGTCAGGAGCTTTTTCCTCCGGGCACCCTGGGGAGTGCTGAGGCCTCCCTGAAAAAGGAGGAAGAGCACAACTACTCCCTGTTCGTCACAGAGGCCAAGCCGGCCGGCAGAGAGGAGCCGGAgatggaagaagaagaagaggaggaggaggaggaggaggaggaagaggaggaggaggNNNNNNNNNNGGAGGAGGAAGAGGTGGATGAGCCAGATGAGCCAGACTTGGAGGAGGAGGACCATGATGAGGGCTTCGGCAGCGAGCACGAGCTGTCTGagaatgaggaggaggaggaagaagaggaggattATGAGGACGATAAGGACGATGACATGAGCGACACCTTTTCCGAACAAGGGTGTGACAATGACGCAGTGGAGGACATGAAGGGTGTGACGGCAGGTTTCTCCAGGAAGAGGGGCAAGCGCCGATACTTCTGGGAGTACAGCGAGCAGCTCACCCCCTCCAAGCAGGAGCGGATGCTAAAGCCCTCTGAGTGGGACAGAGACACATTGCCTAGCAACATGTACCAGAGGAATGGCCTGCATCACGGAAAGTACACGGTCAAGAAATCCCGCCGCACGGATGTGGAAGACCTCACTCCCAACCCCAGGAAGCTGCTCCAAATTGGGAACGAGCTGCGCAAGCTCAACAAGGTGATTAGTGACCTGACTCCAGTGAGCGAGCTCCCGCTGACCGCCCGGCCACGCTCCCGCAAGGAGAAAAACAAGCTGGCATCCAGGGCATGCCGCCTGAAGAAGAAAGCACAGTATGAGGCCAATAAAGTCAAGCTGTGGGGCCTCAACACAGAATATGATCGTATTCTTTTTGTGATTAATGCCATTAAAGAAGAGATCGTGAGCAGGGTGCAGAATCTGAGAGGGGACAAGGGAACAAAAATGGTTGAAAAACTCGACCAGCTCATTAAGGAAACTCTTGTGAGGTCTCCAGTGGCCAGTCAGACATCTGAGTTTGTGAACCAGATCCTGGAGAACACGGCGAGGGGAGATCCTACTGGGGGCCTGGTGGGGCTCCGCGTGCCGACCTCAAAGGTGTAGCGAGCGCCAGCGAGACCACAAGAGTGCCCGGAGCAGACGACACCATTCGCACCATCCGTGTCATGCACTGTAACACtgttatgttttgcatgttaatttACATCAAGGAATACACctaca

Function

GO: NA

KEGG:

id description
K21554 CREBRF, LRF; CREB3 regulatory factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131317 lncRNA upstream 15576 13868402 ~ 13876178 (+) False AMCG00011204
TU131311 lncRNA upstream 32772 13858651 ~ 13858982 (+) True G104980
TU131310 lncRNA upstream 33562 13857831 ~ 13858192 (+) True G104979
TU131220 lncRNA upstream 212374 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA upstream 212374 13665947 ~ 13679380 (+) False G104923
TU131374 lncRNA downstream 90917 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 113083 14013121 ~ 14061024 (+) False AMCG00011209
TU131405 lncRNA downstream 162662 14062700 ~ 14063157 (+) True G105046
TU131410 lncRNA downstream 170362 14070400 ~ 14070969 (+) True G105051
TU131438 lncRNA downstream 318912 14218950 ~ 14262016 (+) True G105078
AMCG00011204 mRNA upstream 13472 13868337 ~ 13878282 (+) True AMCG00011204
AMCG00011201 mRNA upstream 24409 13864615 ~ 13867345 (+) True AMCG00011201
AMCG00011202 mRNA upstream 36910 13851441 ~ 13854844 (+) True AMCG00011202
AMCG00011197 mRNA upstream 149747 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011196 mRNA upstream 170093 13707524 ~ 13721661 (+) True AMCG00011196
AMCG00011206 mRNA downstream 9694 13909732 ~ 13914186 (+) True AMCG00011206
AMCG00011210 mRNA downstream 85627 13985665 ~ 13991927 (+) False AMCG00011210
AMCG00011209 mRNA downstream 137066 14037104 ~ 14061027 (+) True AMCG00011209
AMCG00011212 mRNA downstream 172330 14072368 ~ 14076417 (+) True AMCG00011212
AMCG00011213 mRNA downstream 195117 14095155 ~ 14096053 (+) True AMCG00011213
TU131073 other upstream 948672 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1272699 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1364723 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1824417 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 2047665 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 719652 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1420742 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 1950608 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 1953726 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2063302 15963340 ~ 15984079 (+) True G105373

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000040_03825419_03834200.mRNA True 1958 mRNA 0.50 7 CI01000040 3825122 ~ 3834211 (-)