RNA id: AMCG00011206


Basic Information

Item Value
RNA id AMCG00011206
length 1428
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00011206
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13909732 ~ 13914186 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCGTTTCCTGACGTGCTTGAACCTCTCGGCGTGCCGTACTGCACTTTCAAAGATGGCCGCTTCTCCGGATGTTCATGTCCGTATTTGTGGACAAGAAATAATCAAATACGATTTGGAAATTAAAGCGCTCATTCAGGACATCAGAGAATGCCCGGGTCCACAGACCGTGCTCACGGATTTAAACTCCAAAGTGAAGGAGAAATTCAACCGGCTCAGACTGAGGATCCAGGATCTGGAGCAGATGGCCAAAGAGCAGGATAAGGAGTCGGACAAGCTCGCTATATTGCAGGAAACGGAAGCTCATCGCAAGCAAATGCTGAGTAACCAGACAGCCTGGAGGAAAGCTAATTTGTCATGCAAACTTGCCATTGATTATCTAGAGAAGGATGAACTGCTACAAGGTGGAGACTCTTCAGTGAGGCAGAGAAAGACCACAAAGGAGAGCTTGGCCCAGAGCACCAGCGGCATCACGGAGAGTTTGATGAGCATCAGCAGGATGATGTCACAGCAAGTCCAGCAGAGCGAGGAGACCGTGGGCAGCCTGGCCACTTCCTCAAGGACAGTGCTGGAGACCAACGAGGAGTTTAAGGCCATGACAGGGACCATTCAGCTGGGACGCAAGCTGATCACAAAATACAACCGGAGGGAGTTTACTGACAAGCTGCTTATTTACCTGGCTGTGGCTCTGTTTGTGGCCACagtgctgtacattttaaagaaaaggcTCTTCCCCTTCCTCtagggggagacagagacagaggagggtgggggggaggacagaaaatgaagaaaagcaaaCTTGCGCAGCAGTACCATCCTAAATCCCCTCCAGCAAAGTCACCATTCCCTATCACCCCAGCCAGGATCATTTACCCTACTGCATTCTCAGAAGACTTGTTGAATTGACACCCCAACGCTTACGAACATTTAGTGTGGGTCCCGTGGTCAGAACCGGGCCACGGACCaacatttaatcagtttttaaGATATGAACGGCAGAGTGCAGTCTACTACTATTAACCAATAATTCTTCATTGCCACACTGGTAGAAAATATATACTCTTTTGTATGATAATTGAAAACTGCAGTTTTGGTTAGctgattgatttaataaatgttataattttgtCTTTAATCCTCAATGATTATATgtagtgcattaaaaaaaaacaaaaaaaaaacgtgtaaataatgtatctaaagcacaaagtatttgtattcatgttaaTTTATGCAAGGGACGTATTTCCTTTGATGTACTGTGCCTTCTTCAGAATCCAGTTTGTGCAGGCAATGCTCCTCAGTCTGTGTTTTGTCAATAACACGGTAGGATGTACAGAACAAATAATGTGCCTAATGTACAGAATAAATGCTCTTAGATTTAAAACTCCTTGTCTTCATCTGATGTGAATTTCCTGCGAGGCCA

Function

GO: NA

KEGG:

id description
K08497 SEC20; protein transport protein SEC20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131317 lncRNA upstream 33554 13868402 ~ 13876178 (+) False AMCG00011204
TU131311 lncRNA upstream 50750 13858651 ~ 13858982 (+) True G104980
TU131310 lncRNA upstream 51540 13857831 ~ 13858192 (+) True G104979
TU131220 lncRNA upstream 230352 13665947 ~ 13679380 (+) True G104923
TU131374 lncRNA downstream 76769 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 98935 14013121 ~ 14061024 (+) False AMCG00011209
TU131405 lncRNA downstream 148514 14062700 ~ 14063157 (+) True G105046
TU131410 lncRNA downstream 156214 14070400 ~ 14070969 (+) True G105051
TU131438 lncRNA downstream 304764 14218950 ~ 14262016 (+) True G105078
AMCG00011205 mRNA upstream 9694 13891754 ~ 13900038 (+) True AMCG00011205
AMCG00011204 mRNA upstream 31450 13868337 ~ 13878282 (+) True AMCG00011204
AMCG00011201 mRNA upstream 42387 13864615 ~ 13867345 (+) True AMCG00011201
AMCG00011202 mRNA upstream 54888 13851441 ~ 13854844 (+) True AMCG00011202
AMCG00011197 mRNA upstream 167725 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011210 mRNA downstream 71479 13985665 ~ 13991927 (+) False AMCG00011210
AMCG00011209 mRNA downstream 122918 14037104 ~ 14061027 (+) True AMCG00011209
AMCG00011212 mRNA downstream 158182 14072368 ~ 14076417 (+) True AMCG00011212
AMCG00011213 mRNA downstream 180969 14095155 ~ 14096053 (+) True AMCG00011213
AMCG00011214 mRNA downstream 282349 14196535 ~ 14196906 (+) True AMCG00011214
TU131073 other upstream 966650 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1290677 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1382701 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1842395 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 2065643 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 705504 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1406594 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 1936460 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 1939578 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2049154 15963340 ~ 15984079 (+) True G105373

Expression Profile